Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03633 atggAAGGAGGAGGAATGTTatcaccatcttcatcttcatcacatTCACAAAACTATATCTACAGAGAGTGTTTAAGAAACCATGCAGCAAGCCTCGGAAGCTATGCTACCGATGGCTGCGGAGAATTCACGTTCGACGACAGCTCACAATCGGCTGCAAACAGTCTCCAATGTGCAGCCTGCGGCTGTCACCGGAACTTCCATCGCAAAATAACCGCAATTGTGAGGGAGAATGCCGCCGTCACAATGTCGGATCAGGTGATGGAATATTCCGGTGGAGGAGGTAGCGGTGGAGACGGGAGGAGGAAGAGGTACCGGACGAAATTCACAGCGGATCAGAAGGAAAAGATGATGGGATTTGCTGGGAAGTTAGGATGGAAATTGCAGAGAAAAGAACTTGATGAAGAGATTGAAAGGTTTTGTGAAAGTGTTGGTGTGAGTAGACAAGTTTTTAAGGTTTGGATGCATAATCATAAGAATTCTTGTTCCTCTAATTCTTCCGATCCTTCTACTGGTAATGCTAATTCCTCTCTTACTCAGTAG 543 0.4346 MEGGGMLSPSSSSSHSQNYIYRECLRNHAASLGSYATDGCGEFTFDDSSQSAANSLQCAACGCHRNFHRKITAIVRENAAVTMSDQVMEYSGGGGSGGDGRRKRYRTKFTADQKEKMMGFAGKLGWKLQRKELDEEIERFCESVGVSRQVFKVWMHNHKNSCSSNSSDPSTGNANSSLTQ 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03633 180 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 71 IPR006456 -
Tsu06g03633 180 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 17 168 - -
Tsu06g03633 180 SUPERFAMILY Homeodomain-like 89 161 IPR009057 -
Tsu06g03633 180 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 21 70 IPR006456 -
Tsu06g03633 180 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 168 - -
Tsu06g03633 180 MobiDBLite consensus disorder prediction 160 180 - -
Tsu06g03633 180 Pfam ZF-HD protein dimerisation region 19 71 IPR006456 -
Tsu06g03633 180 Gene3D - 88 166 - -
Tsu06g03633 180 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 102 160 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03633 Tsu-Chr6 48080547 48081325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03633 19 167 ZF-HD Transcription Factor Family AT5G65410 39.037 4.55e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tsu06g03633 ZF-HD_dimer 2.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03633 - - cmo:103504587 217.624