Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03629 ATGTTAGCTAATAGCTTATCTCCATCTTCACTTCCATCTTCTGAGCCTTTTTCTTGCAATGAAAATGGCACTTCTTCCACtaataaaaggaaaagaagaCCCGCCGGAACACCAGATCCAGATGCAGAAGTGGTGTCTCTCTCACCAAAAACATTATTGGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAAAGGGACCAAAATTTACAGATGCATAGAAGAAGGCATAAGGTACCATGGAAGTTATTGAAGAGAGAAACACCAGTTGTTAGAAAAAGAGTTTTTGTTTGTCCTGAACCAACTTGTTTGCACCATGATCCTTGTCATGCTTTAGGTGATCTTGTTGGTATCAAAAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGAAAGATGTTCTAAAGGTTATGCAGTGCAATCTGATTATAAAGCTCATCTCAAAACTTGTGGTACTAGAGGTCATTCTTGTGATTGTGGTCGTGTCTTCTCAAgggTTGAGAGTTTTATTGAGCATCAAGATGCTTGTAACATGGGAAGGATCCATAATTCAGAATCTCAACCACTACAAACACCAACTGCATGCTTATCAAGAACAGCTTCAAGTCCAAGTCCATCAAGTGAAACAAACTTCACAACATATCCATGGCAAACAAGACTTCAAGTCatgcaaaaatcaacaaaagaaTCAACAATTTTCATGAACCCTATTACTCCTCTTACTACTATTACACCTCCTTCTCAAACCTTATCCAAGAACAATAAACTTCTACATCCAAATTTGGAACTTCAactctccacaacaaacaatgCCAACACCATCATGTCTCTGGCACCAGACACGCCTTCAATAAGAAGTATCAGTGCTGCAGAGGCTATTCAGAAGGTTAATAGGTCAACTCAGTTGCATCTCTCAATTGGTTCATCAAATATGAGtgagaaaaatgaaacaaacaatagAAACAACTCAAACTCATCACCTAAAGAGAGTAGCAATAGCAATGAGAAAGttcaatcaacaacaacaaacaacatGGCTTTGGTCAGGATTCAAGAACAAGCAAAGGAACAACTAAGGATAGCTATGGCTGAAAAAGCATATGCTGAAGAAGCAAGGAAGCAAGCAAAGAAACAAATTGAAATGGCTGAACAAGAATTCAACAATGCAAAGAGAATCAGACAACAAGCACAAGGTGAACTTGATAAAGCTTATGGGTTGAAACAACATGCAATCAAGCAAATCAATTCAACTATGCTTCAAATCACTTGTCAAGCTTGCAAACAACAATTTCAACATGAAGATAACTCTTTGGTGTTGAGCTATGTTTCTTCAGCTATAACAACTGAAGGTGGTGAAGTAGAAAATGATGATGGAAAAGGCAAAACAACTAACTAA 1416 0.3496 MLANSLSPSSLPSSEPFSCNENGTSSTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRIHNSESQPLQTPTACLSRTASSPSPSSETNFTTYPWQTRLQVMQKSTKESTIFMNPITPLTTITPPSQTLSKNNKLLHPNLELQLSTTNNANTIMSLAPDTPSIRSISAAEAIQKVNRSTQLHLSIGSSNMSEKNETNNRNNSNSSPKESSNSNEKVQSTTTNNMALVRIQEQAKEQLRIAMAEKAYAEEARKQAKKQIEMAEQEFNNAKRIRQQAQGELDKAYGLKQHAIKQINSTMLQITCQACKQQFQHEDNSLVLSYVSSAITTEGGEVENDDGKGKTTN 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03629 471 Coils Coil 358 406 - -
Tsu06g03629 471 MobiDBLite consensus disorder prediction 1 25 - -
Tsu06g03629 471 Gene3D Classic Zinc Finger 36 98 - -
Tsu06g03629 471 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Tsu06g03629 471 SMART c2h2final6 135 162 IPR013087 -
Tsu06g03629 471 SMART c2h2final6 58 80 IPR013087 -
Tsu06g03629 471 SMART c2h2final6 99 129 IPR013087 -
Tsu06g03629 471 MobiDBLite consensus disorder prediction 312 350 - -
Tsu06g03629 471 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Tsu06g03629 471 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 457 - -
Tsu06g03629 471 PANTHER OS03G0310200 PROTEIN 1 457 IPR039288 GO:0009630
Tsu06g03629 471 MobiDBLite consensus disorder prediction 1 45 - -
Tsu06g03629 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Tsu06g03629 471 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03629 Tsu-Chr6 47958623 47962374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03629 22 457 C2H2 Transcription Factor Family AT1G25250 49.664 2.70e-131 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu06g03629 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03629 K25871 - gmx:100785333 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03629 06 47958623 47962374 Tsu06g03629 06 47958623 47962374 ECH