Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03589 ATGGCTGAGTTTGGGAAAGATGAAGTGCCAAGTCTGTCAGATACTATTCCAAAACAATCAAATGAACCTGATGATTCCAGATTCCAGAGTCATGTACCTAGGACGCGAAGTGTATCGATTTCCATTCCCATGATTCCTATGGATCCATATGAAAGAGATACTAATCTTAGAGGACACACTGGTCCTCTAAGGAGTAAAAGGAAAATGCCATTTAGTCCAATGAGTGGTCCATTATATGTTACTCCTAGACCCGAAAATCTTTTCTGGCAGAATATGGTCGCGCCGAGGAGCAATGCAGTGGAAAGTAAGACAGAAAAGTTTCCTTTATGTAACATCATGAGTGGACATGATTTGCAGAATAACTATGCTGGTAAAAATGAACATTTAGTAAGGTCTGGTCCATTGGGAATGTGTAATGATCCATACTGTACAACTTGTCCAACTTACTTTAAGGCTACTCAACAAATGGATTCGAAAAATTCGGGTTTGTTCAATCCTAAGAATGCCTTCTATGGCGATGCAAAGGATTGGGCAAGAAGAATTTTTGCTTTCTTGATTCCAAATGTACCTAGAGTTATGAATCCACATAATAAACTTGTACAACAATGGAATAAATTTTTTGCAATTTGTTGCTTGGTGGCAATTTTTGTGGATCCGTTATTTTTCTTCTTGCTGTCTGTGAATAAGGAACATAAATGTATTGTTATTGATTCGACTATGACAACCGTGCTTATTTTACTTAGAAGCACAAATGATTTCATACATTTCCTAAATATTATTCTTCAGTTTAGGTTGGCATATGTGGCACCCGAGTCTAGGGTGGTTGGTGCAGGAGAGTTAGTTGACCATCCTAAGAAAATAGCTCTTCACTATCTTCatacatattttctttttgacttaTTTGTTGTACTTCCACTTCCTCAGATAATGATATTGTTTTTCCTACCAAAACACTTGGGAACATCAGGCGCAAATCATGCGAAGAATCTTTTGCGCGGCGCCGTCCTTGCTCAGTACATTCCTAGATTGTGTAGATTTCTTCTTCCTATGCTAATTTCTCCATCAGGGTTCATATTTGAGTCGGCGTGGGCAAGTTTCTTCATAAATCTTTTTACCTTCATGCTATCTGGCCATGTTGTTGGGTCATGGTGGTACCTATTCGGTTTGCAGAGGGTTAATCAATGTCTACGAAATGCCtgcaagaaaaatatatattttgatgaatGCTCAAAATTAATTGATTGTGGACATGGAAGAACCGAGGAATATCATAATGAAACAAGTTGGACTGATTGGATGAAAAATGACAATGCAAGTGCCTGTTTTACAGAAGATGGTTTTGAGTATGGGATCTATCTTAAGGCTGTTAACCTTACTACAAAACATAATGTGTTTACAAGATATGTATATTCATCATTTTGGGGATTTCAGCAAATTAGTACTCTGGCTGGAAATTTGTCACCAAGCTATTTTATTTGGGAAGTCCTTTTTACTATGACAATCATTGGTTCAGGACTCTTGCTTTTTGCTCTTCTCATTGGGAACATACAGAACTTTCTTCAGGCTCTTGGAAGAAGGAGAATGGAAATGTCACTTAGACAACGCGATGTTGAGCAGTGGATGAGCCATAGGCGCCTAGCAGAAGATCTGAGAAGGAGAGTGCGACAAGCAGAACGTTATAATTGGGCTGCAACGAGAGGAGTGAATGAAGAAATACTCATGGAGAATTTACCTGAAGATCTTCAGAGGGACATCAGACGTCATTTCTTTAAATTTGTTAAGAAGGTTCGAATTTTTTCCTTGATGGATGACCCGATATTGGATGCCATTTGTGAGAGACTAAGACAGAAAATATATATCAAAGGAAGCAAAATTTTGTATGATGGTGGCTTGGTAGAGAAAGTGGTTTTTGTTGTTCGCGGAAAATTGGAAAGTATCGGTGAAGATGGAATTAGAGTTCCTCTATCTGAAGGCAATGTTTGTGGTGAAGAACTTCTGGCATGGTGTCTTGAGCATGCTTCGGGAAACAAAGGTTATGGAAAAACAAGAATTCCAAGACAAAGGTTGGTAATTAGCAATAGGACAGTATTGTGCCTAACAAATGTGGAGGCATTTTCAATTAGAGCAGCAGACCTTGAAGAAGTTACAAGCATTTTTGCAAGATTCTTGAGGAATCCTGGTGTTCAAGGAGCCATAAGGTATGAATCACCTTATTGGAGATGTCTTGCAGCAACGCGCATCCAAGTTGCGTGGAGATACAGAAAGAAATGTCTTTGTCGCGCTAACACTTTACAATCAAATAATGAAGCATCAAATTTGTAA 2322 0.3807 MAEFGKDEVPSLSDTIPKQSNEPDDSRFQSHVPRTRSVSISIPMIPMDPYERDTNLRGHTGPLRSKRKMPFSPMSGPLYVTPRPENLFWQNMVAPRSNAVESKTEKFPLCNIMSGHDLQNNYAGKNEHLVRSGPLGMCNDPYCTTCPTYFKATQQMDSKNSGLFNPKNAFYGDAKDWARRIFAFLIPNVPRVMNPHNKLVQQWNKFFAICCLVAIFVDPLFFFLLSVNKEHKCIVIDSTMTTVLILLRSTNDFIHFLNIILQFRLAYVAPESRVVGAGELVDHPKKIALHYLHTYFLFDLFVVLPLPQIMILFFLPKHLGTSGANHAKNLLRGAVLAQYIPRLCRFLLPMLISPSGFIFESAWASFFINLFTFMLSGHVVGSWWYLFGLQRVNQCLRNACKKNIYFDECSKLIDCGHGRTEEYHNETSWTDWMKNDNASACFTEDGFEYGIYLKAVNLTTKHNVFTRYVYSSFWGFQQISTLAGNLSPSYFIWEVLFTMTIIGSGLLLFALLIGNIQNFLQALGRRRMEMSLRQRDVEQWMSHRRLAEDLRRRVRQAERYNWAATRGVNEEILMENLPEDLQRDIRRHFFKFVKKVRIFSLMDDPILDAICERLRQKIYIKGSKILYDGGLVEKVVFVVRGKLESIGEDGIRVPLSEGNVCGEELLAWCLEHASGNKGYGKTRIPRQRLVISNRTVLCLTNVEAFSIRAADLEEVTSIFARFLRNPGVQGAIRYESPYWRCLAATRIQVAWRYRKKCLCRANTLQSNNEASNL 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03589 773 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 6 763 - -
Tsu06g03589 773 CDD CAP_ED 598 715 IPR000595 -
Tsu06g03589 773 Gene3D Jelly Rolls 596 721 IPR014710 -
Tsu06g03589 773 Pfam Ion transport protein 203 526 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu06g03589 773 Gene3D - 205 523 - -
Tsu06g03589 773 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 763 - -
Tsu06g03589 773 MobiDBLite consensus disorder prediction 1 70 - -
Tsu06g03589 773 ProSiteProfiles cAMP/cGMP binding motif profile. 598 666 IPR000595 -
Tsu06g03589 773 SUPERFAMILY Voltage-gated potassium channels 195 526 - -
Tsu06g03589 773 Gene3D Helix hairpin bin 525 590 - -
Tsu06g03589 773 SUPERFAMILY cAMP-binding domain-like 526 721 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03589 Tsu-Chr6 47216935 47226503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03589 7 678 Ion Channels AT3G17700 60.499 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03589 K05391 - gmx:100795955 1217.99