Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03588 ATGCAGCATTTGAATCCCTTGTCTCGTTTTGTACAGAATGGAGGAATTGTGATGAACGCAATACTAAAGAAGAATATTTGTCTCATTTTCAACTCTGCTGTGGGTATCAAACTCAATAGTATGaATCATCAAGGAAACATGAATCATTTTGAAAAAGATGAAATTCAAATTCTGTCAGAAACACGTCTACAACAATCCGAAGATCTCGTGGATTCTAACTTTCAAAGAAACATATCAAGGACACAAAGTGCTTCAATTTCTATTCCTATGGCTTCCTTGGATCGGTATGAGAGAGAACCAAATCTTGTTGGACATATTGCTCCGCTTCATACGTTCTACATTTCTCTTTATGGCATTGCCAAAGGTTTTGGGagaaaacttttttctttatgCTCTTCATGTATTCCTGGAGTTATGAACCCTCACGCCAAACTTATTCAACAATGGAACAAGTTTTTGGCTATGATTTGCCTGGTTGCAATtattgttgatccattatttttcttcttaatctaTGTGAAGAAGGATGATAAATGTATTGTTGTCAATTGGACAATGGCAACAACACTTGTTTTAATTAGAAGCATATTTGATGTTCTGTATTTCTTGAACATTCTTCTCCAATTTAGGTTGGCATACATTTCTCCTGGGAAAAGGTTCCTTCGTGCTGATGATTTAGTCGACGATCCCAAGAAAATTGCTATCAATTACATGCGGGGTTATTTTCTTGTTGACTTGTTTGATGTATTGCCTCTTCCTCAGATAATGATATTGATTGTTCTACCAAATTCCTTGGGGTCTTCAGGAGCAAATTTTGCGATGAATGTGATCTTTGTACAGTATATTCTCAAATTCTTCAGATTTTTGCCTCTGCTAATTGGCATGTCTCCAAGTAGAATCATATTAGAGACAGTCTGGGCAAATTTAGTTGTAAATCTTCTCAGGTTTATGTTAGCTGGTCATATTGTTGGTTCATGCTGGTACCTCTTTGGTCTACAGAGGGTTAACGAATGTTTGCGAGATGCCTGCCATCATTCTAACCTACTTGGATGCATGGACTTGATTGATTGTGATTCTAAAGTGGGGAATGTATCAGCTACACTATGGAGTGAATATAAGGGTGCTGGTGCTTGTTTGGATCCCATGTCTGGTGCTTTTTCTTATGGAATCTATGCCAATGCTATACCACTTACTATAGAAACTAAGTTGATTAACAAATATGTGTATGCACTCTTTTGGGGACTCCAGGTATgcattttgttcttttattttttactttcgGTTGTAATTTAA 1293 0.3511 MQHLNPLSRFVQNGGIVMNAILKKNICLIFNSAVGIKLNSMNHQGNMNHFEKDEIQILSETRLQQSEDLVDSNFQRNISRTQSASISIPMASLDRYEREPNLVGHIAPLHTFYISLYGIAKGFGRKLFSLCSSCIPGVMNPHAKLIQQWNKFLAMICLVAIIVDPLFFFLIYVKKDDKCIVVNWTMATTLVLIRSIFDVLYFLNILLQFRLAYISPGKRFLRADDLVDDPKKIAINYMRGYFLVDLFDVLPLPQIMILIVLPNSLGSSGANFAMNVIFVQYILKFFRFLPLLIGMSPSRIILETVWANLVVNLLRFMLAGHIVGSCWYLFGLQRVNECLRDACHHSNLLGCMDLIDCDSKVGNVSATLWSEYKGAGACLDPMSGAFSYGIYANAIPLTIETKLINKYVYALFWGLQVCILFFYFLLSVVI 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03588 430 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 50 106 - -
Tsu06g03588 430 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 121 418 - -
Tsu06g03588 430 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 50 106 - -
Tsu06g03588 430 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 121 418 - -
Tsu06g03588 430 SUPERFAMILY Voltage-gated potassium channels 146 417 - -
Tsu06g03588 430 Pfam Ion transport protein 150 418 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03588 Tsu-Chr6 47199405 47206301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03588 111 416 Ion Channels AT3G17700 50.799 1.16e-106 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03588 K05391 - ccaj:109789004 430.254