Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03582 ATGCCTCCACTCCTTAGGAGCCTAGAAATGTTACAAAGAGGCCGTGATGCTGAGAAATGGATGAGCAATCGTTGCTTACCAGAAGATCTCAAAAGGAGAGTACGTCAGGCTCAACGGTATAGTTGGTCTGCAATAGGGGGTGTTCCTGAGAAAATGGTTCTCGAGAATTTGCCAGAAGATCTACTCACAGACATACGGCGTCATCtcttcaaatttattaaaagaGTTCCAATTTTTTCCGTGATGGATGAGGATGAGCCTATTATCTTAGATGCCGTTCATGAGCGACTAATACAGATGACGTACATCAAAGGAAGTAGAATTTTGCGTCAGGGTGGTCTTGTACAGAAGATGGTGTTTATTGTGCGTGGAAGATTGGATAGCATAGGAGAAGATGGGATTCCAGTTCGGTTATCCGAAGGGGATGCTTGTGGTGAAGAACTTCTAACATGGTATCTTGACCAGTCTTCTGAAAGCAGAGAAGGTAAAAAAGTAAAGCTTCAAGGACAAGGACTGATTAGTAACAGAACAGTAATATGCTTAACCAATGTGGAGACATTTTTACTTCGCACTAAAGACATCGAAGAAATCACACCTCTTATGGCAAGATTCTTGCAGAGTCCCCGTGCTCAAGTAGTCATAAGGTATACATCACCTTATTGGAGATCACTTGCAGCAAACAGAATTCAGATTGCATGGAGATACAGGAAGAAACGTCAAAGCAGGGGTGAAGCTAATTTGGCTACCCCaaaagttactttttatttgtatGAGTAA 777 0.4093 MPPLLRSLEMLQRGRDAEKWMSNRCLPEDLKRRVRQAQRYSWSAIGGVPEKMVLENLPEDLLTDIRRHLFKFIKRVPIFSVMDEDEPIILDAVHERLIQMTYIKGSRILRQGGLVQKMVFIVRGRLDSIGEDGIPVRLSEGDACGEELLTWYLDQSSESREGKKVKLQGQGLISNRTVICLTNVETFLLRTKDIEEITPLMARFLQSPRAQVVIRYTSPYWRSLAANRIQIAWRYRKKRQSRGEANLATPKVTFYLYE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03582 258 ProSiteProfiles cAMP/cGMP binding motif profile. 89 149 IPR000595 -
Tsu06g03582 258 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 246 - -
Tsu06g03582 258 Gene3D Helix hairpin bin 9 70 - -
Tsu06g03582 258 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 6 246 - -
Tsu06g03582 258 Gene3D Jelly Rolls 76 201 IPR014710 -
Tsu06g03582 258 CDD CAP_ED 78 205 IPR000595 -
Tsu06g03582 258 SUPERFAMILY cAMP-binding domain-like 8 197 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03582 Tsu-Chr6 47175880 47179143 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03582 6 157 Ion Channels AT3G17700 61.184 2.63e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03582 K05391 - gmx:100795427 327.02