Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03578 ATGCTGTCAGAAACACGTGCACAACGATCTGATGAACCTCAGGATACTACGTTCCGAAGAAACATATCGAGGACACGAAGTGCTTCAATTTCTATCCCTATGGCTTCTCTGGATCCATATGAGAGACAGCCGAATCTTGTCGGACATACTGGTCCGCTTCGTACTGCGAGGAAAACACCGTTGGGGCAAATGAGTGGTCCATTATATCCAACACCTGCAATTGGAAATCCTTTTCAGAATAGTATAGTGGTGGCAGGAAGCAAAGCAGGAGAGAACAAGACAGAGAAGTTTGATGGCACAGATGAACATCGTTGGAATGATAATGACTACGACAAAAAGAATGAGCACTTGTTGAGGTCTGGACAACTCGGAATGTGTAATGATCCTTATTGCACTACTTGCCCTACTTACTTCAAGCTTTCTCAGCAAAGAAAACCAAGACCTTCCACTATATTTGATCCCAAGTTCCACAATTCTCTTTATGGCGACGCGAAAGGTTTTGGaagaaaacttttttctttctgctCTTCATGCATTCCTGGAGTTATGAACCCTCACACTAAAGTTGTACAACAATGGAACCAGTTTTTGGCCATAACTTGCATACTCTCAATttttgttgatccattatttttcttcttaatatatgtgaaaGAGCGTGATAAATGTATTGTTATCAACTGGGAAATGGCAAAAATACTTGTTGCAGTTAGAAGCATAACTGATTTTGTGTATTTCTTGAACATTCTTCTCCAGTTTAGGTTGGCTTATATTTCTCCCGAGTCAAGGGTGGTTGGTGCTGGCGATTTAGTTGACCATCCCACAAAAATTGCTCTTCATTATTTTAAGAGTTATTTTGGCTTTGACTTATTTGTTGTATTACCTCTTCCTCAGATAATGATATTGGTTATCCTACCACATTCCTTGGGGTATTCAGGAGCAAATTATGCTAAGAATCTTCTACGTCTAGCGATCCTTATACAGTATATTCCCAGATTATTCAGATATTTGCCTCTGCTAATTGGCCAGTCTCACACTGGATTCATATTTGAGTCAGCCTGGGCAAACTTCATTATAAATCTTCTCATTTTTATGCTATCTGGCCATGTTGTTGGTTCATGCTGGTACCTCTTTGGACTACAGAGGGTTAACCAATGTTTGCGAAATACCTGCCATCATTCTCATCCTCTATCTGAGTGCATGAAGTTGATTGATTGTGATTCTAAAGTGAAGAGTATATCAACTACATGGGCCAATGATACGGGTGCCATTAATTGTTTGAATTCCTCATCTGGTGTTTTTGATTATGGAATCTATGCCAACGCTGTACCACTTACTATAGAAACTAATTTGATCAACAAATACGTGTATGCACTCTTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGTAATCAAATCCCAAGCTATTTTGTGTGGGAAGTCCTCTTTACAATGTCCATCATAGGATTGGGACTCTTGCTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAGGTTAGAAATGCAACTTAGGGGCCGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCAGAAGAACTAAAAAAGAGAGTCCGGCAGGCTGAACGGTATAGTTGGGCTGCAACAAGGGGTGTTCCTGAGAAAATGGTTCTCGAGAATTTGCCAGAAGATCTCCAGACAGATATACGACGTCATCTCttcaaatttgttaaaaaaGTTCGAATATTTTCCCTGATGAATGAGGATGAGCCTATCTTAGATGCCATTCGTGAACGACTAGTACAGACAACATACATCAAAGGAAGTAAAATTTTGAGTCAGGGTGGTCTTGTACAGAAGATGGTGTTTATTGTGCGTGGAAAATTGGAGAGCATCGGAGAAGATGGGATTTCGGTTCCTTTATCCGAAGGGGATGCTTGTGGTGAAGAACTTCTAAGATGGTATCTTGAACAGTCTTCTGAAAGTAAAGAAGGTAAAAAAGTAAAGCTTCAAGGACAAGGGTTGACCAGTGACAGAACAGTAAGATGCCTAACCAATGTGGAGGCATTTTCACTCCGCACTAAAGACATTGAAGAAGTGACAACTCTTTTCGCAAGATTCTTGAGGAGCCCTCGTGTTCAAGGAGTCATAAGGTATGAATCACCATATTGGAGATCACTTGCAGCAAACAGAATTCAGGTTGGATGGAGATACAGGAAGAAGCGTCTAAGTCGTGCTAATACCACACAAAATGATTATCAAACATCGAAATCATAG 2286 0.399 MLSETRAQRSDEPQDTTFRRNISRTRSASISIPMASLDPYERQPNLVGHTGPLRTARKTPLGQMSGPLYPTPAIGNPFQNSIVVAGSKAGENKTEKFDGTDEHRWNDNDYDKKNEHLLRSGQLGMCNDPYCTTCPTYFKLSQQRKPRPSTIFDPKFHNSLYGDAKGFGRKLFSFCSSCIPGVMNPHTKVVQQWNQFLAITCILSIFVDPLFFFLIYVKERDKCIVINWEMAKILVAVRSITDFVYFLNILLQFRLAYISPESRVVGAGDLVDHPTKIALHYFKSYFGFDLFVVLPLPQIMILVILPHSLGYSGANYAKNLLRLAILIQYIPRLFRYLPLLIGQSHTGFIFESAWANFIINLLIFMLSGHVVGSCWYLFGLQRVNQCLRNTCHHSHPLSECMKLIDCDSKVKSISTTWANDTGAINCLNSSSGVFDYGIYANAVPLTIETNLINKYVYALFWGFQQISTLAGNQIPSYFVWEVLFTMSIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEELKKRVRQAERYSWAATRGVPEKMVLENLPEDLQTDIRRHLFKFVKKVRIFSLMNEDEPILDAIRERLVQTTYIKGSKILSQGGLVQKMVFIVRGKLESIGEDGISVPLSEGDACGEELLRWYLEQSSESKEGKKVKLQGQGLTSDRTVRCLTNVEAFSLRTKDIEEVTTLFARFLRSPRVQGVIRYESPYWRSLAANRIQVGWRYRKKRLSRANTTQNDYQTSKS 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03578 761 CDD CAP_ED 585 703 IPR000595 -
Tsu06g03578 761 SUPERFAMILY Voltage-gated potassium channels 185 513 - -
Tsu06g03578 761 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 1 752 - -
Tsu06g03578 761 Pfam Ion transport protein 193 513 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu06g03578 761 SUPERFAMILY cAMP-binding domain-like 513 706 IPR018490 -
Tsu06g03578 761 Gene3D Helix hairpin bin 512 577 - -
Tsu06g03578 761 MobiDBLite consensus disorder prediction 1 55 - -
Tsu06g03578 761 Gene3D - 194 510 - -
Tsu06g03578 761 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 752 - -
Tsu06g03578 761 Gene3D Jelly Rolls 583 709 IPR014710 -
Tsu06g03578 761 ProSiteProfiles cAMP/cGMP binding motif profile. 587 655 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03578 Tsu-Chr6 47145412 47153428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03578 10 663 Ion Channels AT3G17700 60.633 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03578 K05391 - ccaj:109789004 1135.55