Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03574 ATGGATTTTGAATCACCTTCTTCATTCACCTACGATGTTTTCATTAGTTTCAGAGGCACTGACACTCGTTTTGGTTTTACTGGCTATCTCCACAAAGCTCTTTCTGATAAAGGAATCCGCACTTTCATCGATGACAAGAACATTCAAAGAGGTGACGAAATCACACCATCACTTGTTAAAGCCATTGAAGAGTCTATGATATTCATTCCTGTGTTTTCTATCAACTATGCTTCTTCTTCGTTTTGCCTTGACGAACTCGTCCACATCATTCATTGCTTCAAGGAAAAGAAGGGTCGGAAAATTTTGCCTGTTTTCTATGATGTCGATCCTTCTCACGTGCGGCATCAGAAAGGAAGTTATGGTGAAGCATTGGCTAACCATGAAGAGATGTTCAAAAATAACAAGGAAAAGTACATTGGTTACACAGAGAGGTTGCATAAATGGAAGATGGCTCTTTACCAAACTGCTAACTTGTCTGGCCACCATTTCAGTCATGGGAATGGATATGAATATGAATTCATTGGAAAGATAGCTACAGAGGTGTCAAATAGGATCAGTCGTGCTCCTTTACATGTTGCAGATCACCCTGTTGGATTGGAGTCTCGAGTATTAAAAGTGAAGTTGCTTCTAGATGTTGACCCATCTAAAGATGAAGTCCGCATGATAGGAATCTGTGGGATAGGTGGCATAGGTAAAACAACACTTGCACGAGCCATTTACAATTTGATTTCTCACCAATTTAAAGTTACGTGTTTTCTTCACAATGTGAAAGAACATTCAGCTAAACATGGCCTAGAACATGTTCAAGAGGAACTTCTTTCAAAAACAGTTGAATTGAATGATAAGTTAGGAGATGTTGCCGAGGGAATTCCTATCATAAAACAAAGGCTACAGTGTAAAAATGTTCTATTGATTCTCGATGATGTAGACGAACTGAAGCAGCTGCAGGTTTTGGCTGGAGGGCTTGACTGGTTCGGTCCTAAAAGCAAAGTCATCATTACCACTCGAGACAAACAATTGCTAGCCAGTCATGGGGTTGAAATAACATATGAAGTGGATGGGTTAAATGTGGATGAAGCTCTTGAATTGTTGACGTGGAAGGCATTTAAAAACAACAATGTTGATTCAAGTTACAAGTACATTTTACGACGTGCAGTAAGTTACGCTTCTGGCCTGCCATTAGCTTTAGAAGTAGTGGGTTCCAACTTGTTTGGAATGGATATAGGAGAATGGGAATCTACATTAGATCGGTATGAAAGGATCCCGAATAAAGAGATTCAAAAGATACTTAAAGTAAGCTTTGATTCTTTGGAAAAAGATGAGCAGAGTGTCTTTCTCGACATTGCTTGTTGCTTCAAAGGGTATAACATGACAGAGATCATAGATATACTTCATACTCATTACGGTCATAACATCAAATATCACATCAGAGTGTTGGTTAACAAATCTCTTATACAAACTAGTTGGCACGGGAAAAGTTATAATGTGACAGTACATGACTTGATAGAGCACATGTGTAAAGAAATTGTCCGACTAGAATCTCCTGAAGATCCTGGAGAACGCAGTAGGTTGTGGTCTGAAGAAGATATAGTTcaagttttagaagaaaatacGGGAACAAGTAGAATTGAAATTATATGTATGGATTACCCGTCATTAGATGTTAGAGACGTAAGAGTAGCATGGAAGGGAGATGCtttcaagaaaacaaaaaacctCAAAACTTTGATTATTAGAAGTGGCATCTTTTCCAAAGGTCCTAAACATCTTCCAAATAGTTTGAGATTTCTAGAATGGCACAGATATCCTTCACATGATATACCATCTGATTTTTGTCCGAAGAAACTTTCTGTATGTAAGCTACCTAGAAGTTTGCTTAAATCATTTGAGTCGCCTTCCTCATTGAAGAGGTTCATAAATATGAAGGAGTTAAATTTGGACTACTGTGGAAGTCTAAAACGGATACTTGATGTATCTGGTCttcaaaatttagaaatattttcaattaaaaaatgtataaatttgATTGAAATTCACCGTTCTATTGGTTTCCTGAGTAAACTTCAAATCCTAGTTGCTGAAGGTTGTTGCAAGCTTAGGAGTTTTCCGTCCATGAAGTTAACTTCTCTTTATCAACTGGATCTTTCATCTTGTGCGAGTCTCAAGAGTTTTCCAGAAATATTAGGAGAGATGGAAAACATAGCATCACTTTTATTGGTGGGAACTTCAATAGAAGAGTTGCCATTTTCATTTTACAATCTCGCTCGGCTTCATAGTTTACAAATAGAGGCACGCGGAATACTTAAGTTGACTAGTAGTATCACCATGATGCCAAAATTGTCGTGGATTACTATTAAGGGAGGTCTATTATTGCCAAACCAGAATGTTAAACTGAATTCCATGATGTCTTCAAATGTACGACAACTTCAGCTCATAGAATGCAACTTGTCGGAAGAATCTCTTGCAATGCTTCTCACGTGGTTTACTAATGTGGAATATTTAAATCTGTCGGGGAGTAATGTCACAATTCTTCCAGAATGCATCAAAGAGTCTCACTTTTTAAGGCGGCTTCATTTGGATGATTGCAAATGGCTTCGAGAAATTAGAGGGGTTCCACCAAATTTGAAACATTTATCTGCATTAGGCTGCAAATCATTGACTTCCTCGTGCCGGAGCATGCTACTAAATaagGAACTACATGAGGCTGGAAAAACAAACTTTCGTATGACAGGAAAAGAAAGTATTCCGGAGTGGCTTGAACACCGAAGCATAGGACAGTCAATTTCTTTCTGGTTTCGTAGCAAGATCCCTTCTGTAGTTGTCTTCTTTGTCATTAAATCGATGCATAAAAAGCACTCTCTCAGTGAATTTCTTTCATTAAGACCCAATTTTTTCATCAATGGCTATGAATCTCAATGTGGTCTTAGCAAAGGTAGTAATATCGGGGTAGAACCAGAAAATACGTATCTATATGATCTTCAACTGGAGGACATGCGATTCAATTCTATACTACACAATTCACTTCGAAAAAATGAATGGATCCATGTGGAGATTACGTGTGTGTCTTCAAAGATGATATCGCTCCTCACAGAATTTGGAATCCATGTATTAAATCAGAAAGGTAGCATGGAGGATATTCAATTCACAAATCCTTGTAAGAAGAGAAAGTTATTGGATGAAATTGCTGACGATCACTATTCACAATGA 3207 0.3723 MDFESPSSFTYDVFISFRGTDTRFGFTGYLHKALSDKGIRTFIDDKNIQRGDEITPSLVKAIEESMIFIPVFSINYASSSFCLDELVHIIHCFKEKKGRKILPVFYDVDPSHVRHQKGSYGEALANHEEMFKNNKEKYIGYTERLHKWKMALYQTANLSGHHFSHGNGYEYEFIGKIATEVSNRISRAPLHVADHPVGLESRVLKVKLLLDVDPSKDEVRMIGICGIGGIGKTTLARAIYNLISHQFKVTCFLHNVKEHSAKHGLEHVQEELLSKTVELNDKLGDVAEGIPIIKQRLQCKNVLLILDDVDELKQLQVLAGGLDWFGPKSKVIITTRDKQLLASHGVEITYEVDGLNVDEALELLTWKAFKNNNVDSSYKYILRRAVSYASGLPLALEVVGSNLFGMDIGEWESTLDRYERIPNKEIQKILKVSFDSLEKDEQSVFLDIACCFKGYNMTEIIDILHTHYGHNIKYHIRVLVNKSLIQTSWHGKSYNVTVHDLIEHMCKEIVRLESPEDPGERSRLWSEEDIVQVLEENTGTSRIEIICMDYPSLDVRDVRVAWKGDAFKKTKNLKTLIIRSGIFSKGPKHLPNSLRFLEWHRYPSHDIPSDFCPKKLSVCKLPRSLLKSFESPSSLKRFINMKELNLDYCGSLKRILDVSGLQNLEIFSIKKCINLIEIHRSIGFLSKLQILVAEGCCKLRSFPSMKLTSLYQLDLSSCASLKSFPEILGEMENIASLLLVGTSIEELPFSFYNLARLHSLQIEARGILKLTSSITMMPKLSWITIKGGLLLPNQNVKLNSMMSSNVRQLQLIECNLSEESLAMLLTWFTNVEYLNLSGSNVTILPECIKESHFLRRLHLDDCKWLREIRGVPPNLKHLSALGCKSLTSSCRSMLLNKELHEAGKTNFRMTGKESIPEWLEHRSIGQSISFWFRSKIPSVVVFFVIKSMHKKHSLSEFLSLRPNFFINGYESQCGLSKGSNIGVEPENTYLYDLQLEDMRFNSILHNSLRKNEWIHVEITCVSSKMISLLTEFGIHVLNQKGSMEDIQFTNPCKKRKLLDEIADDHYSQ 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03574 1068 Gene3D - 354 433 IPR042197 -
Tsu06g03574 1068 PANTHER ARCHAEAL ATPASE 21 1020 - -
Tsu06g03574 1068 SUPERFAMILY "Winged helix" DNA-binding domain 424 535 IPR036390 -
Tsu06g03574 1068 SMART till_3 10 158 IPR000157 GO:0007165
Tsu06g03574 1068 Pfam NB-ARC domain 216 435 IPR002182 GO:0043531
Tsu06g03574 1068 Gene3D - 434 509 IPR036388 -
Tsu06g03574 1068 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 160 IPR035897 -
Tsu06g03574 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 448 IPR027417 -
Tsu06g03574 1068 SUPERFAMILY L domain-like 560 892 - -
Tsu06g03574 1068 Gene3D - 185 348 IPR027417 -
Tsu06g03574 1068 Pfam TIR domain 11 184 IPR000157 GO:0007165
Tsu06g03574 1068 ProSiteProfiles TIR domain profile. 9 185 IPR000157 GO:0007165
Tsu06g03574 1068 Gene3D - 8 184 IPR035897 -
Tsu06g03574 1068 Gene3D Ribonuclease Inhibitor 548 914 IPR032675 -
Tsu06g03574 1068 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 1020 IPR044974 GO:0006952
Tsu06g03574 1068 PRINTS Disease resistance protein signature 221 236 - -
Tsu06g03574 1068 PRINTS Disease resistance protein signature 296 310 - -
Tsu06g03574 1068 PRINTS Disease resistance protein signature 389 403 - -
Tsu06g03574 1068 PRINTS Disease resistance protein signature 705 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03574 Tsu-Chr6 47117698 47121774 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03574 7 791 WRKY Transcription Factor Family AT4G12020 29.680 1.88e-71 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03574 - - gmx:100780257 1116.29