Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03572 ATGGAGTCATATGAGAAAGAAACTAGTCCTAAGGGACATGCTGGTGCACTCTGTAGTGTAGTTGTGATCGGAAACAAAGTAGAGAatttcaagaaagaaaaagtttCTCCTTTCCATGTCACATGTGATGGAGAAAATGAACATTTAGAGAAGTCTGGAGCATTAGGAATGTGTGATGATCCTTATTGTACTACTTGCCCTACTtacttcaaagcttctcaacaAAGAAATCCAAAAGATTCAGCTGAATATGATCCCAAGTTCCAAAGTGCACTTTATGGAGATGCCAAGGGTTTTGGGAGAAAACTTTTGTCTTGCTTCTCTTCATGTGTTCCTGGAGTTATAAATCCTCACACTAAACTTGTTCAACAATGGAACAAATTTCTGGCCATTTTTTGCATGGTGGCAATTTTTGTGGAtccattatttttattcttaatataTGTGCAGAAGGATTTTAATTGTATTGCTATCAACTGGACAATGACAGAAACACTAGTTTTACTTAGAAgcatgaatgattttgtttatttcttaaACATTCTTCTCCAGTTTAGGTTGGCCTATGTTTCTCCAGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGATGTACCCAAGAAAATTGCTGTCTATTACCTGAAGAGTTATTTTCTTATTGACTTGTTTGTTGTATTGCCTCTTCCTCAAATAATGATACTATCTGTCTTACCAAGACACTTGGGTTTATCAGGAGCCAATTATGCTAAGAATCTTCTACGTGCAGTGATCCTTGTGCAGTACATTCCAAGATTATTTAGGATTTTGAATCTGCTAAATGGCAGATCTCCAACAGGATTCATATTTGAGTCAGCACGGGCAAATTTCATTATAAATCTTCTCATGTTTATGCTTGCTAGCCATGTTGTTGGATCTTGCTGGTACCTTTTTGGTCTACAGAGGGTAAATCAATGTTTGAGAGATGCATGCAGTAAGTCAAACATCAAAGGATGCATTGAAGTCATTGACTGCGGACATGGTCGTAATCAAACTTATCAGTCAGCAGACCAAACATCAGTTATGTGGAGCAACAATTCAGATGCAATAGCTTGTTTGGATCCTTCTCTCAAGAGTTTTCATTATGGAATTTATGTCACTGCCGTACCACTTACTTTTGAAACTAACATGGTCAAGAAAtatgtctattctcattttTGGGGATTACAGCAAATCAGTACTCTGGCTGGTGGTTTAACACCGAGCTATTTTGTATGGGAAGTCGTTTTCGCAATTTCTATCATAGGATTGGGACTCTTGCTTTTTGCACTTCTCATTGGAAATATACAGAACTTTCTCCAAGGTCTTGGAAGAAGAAGGCTAGAAATGCTACTTAGAAGTCGTGATGTTGAGCAATGGATGAGGCATCGTCGCTTACCTGAAAATCTAAGAAGGAGAGTACGACAGGCTGAACGATATAATTGGGCTGCAACAAGAGGAGTGAACGAAGAAACACTTCTTGTAAATTTGCCGGAAGATCTTCAGATTGACATTAGGCGtcatcttttcaattttattaagaaaATTCGGATTTTCTCTCTGATGGATGAGCCTATTTTAGATGCAATTTGTGAGAGACTAAGACAGAAGACATACATAAATGGAAGTAGAATTATGAGTCAAGGTGGTGTAGTTGAGAAGATGGTGTTTGTTGTTCGTGGAAAATTGGAGAGTCTTAATGGTGAAAATGGAATTGGAGTTTCTTTAGCTGAAGGCGATGCTTGCGGTGAAGAACTTCTTACATGGTATCTTGAACATTCTTCTTTTAGCAGAGATGGCAAAAAAGTAAGGCTTCCAGGACAGAGGTTAATTAGCAGCAGGACAGTAAAGTGCTTAACAAATGTGGAAGCTTTTTCACTAAGAGCTGCAGATCTTGAAGAAGTTACAACCATTTTCATGAGATCCTTTAGGAGCTTTCTTGTTCAAGGACCTTTAAGGTATGAATCACCTTATTGGAGATCCCTTGCAGCAACCAGAATTCAGGTTGCATGGAGATATTGGAAGAAACGTCAAAAGTTATCTAATCAAACATTGAAGTTATAG 2079 0.3651 MESYEKETSPKGHAGALCSVVVIGNKVENFKKEKVSPFHVTCDGENEHLEKSGALGMCDDPYCTTCPTYFKASQQRNPKDSAEYDPKFQSALYGDAKGFGRKLLSCFSSCVPGVINPHTKLVQQWNKFLAIFCMVAIFVDPLFLFLIYVQKDFNCIAINWTMTETLVLLRSMNDFVYFLNILLQFRLAYVSPESRVVGAGDLVDVPKKIAVYYLKSYFLIDLFVVLPLPQIMILSVLPRHLGLSGANYAKNLLRAVILVQYIPRLFRILNLLNGRSPTGFIFESARANFIINLLMFMLASHVVGSCWYLFGLQRVNQCLRDACSKSNIKGCIEVIDCGHGRNQTYQSADQTSVMWSNNSDAIACLDPSLKSFHYGIYVTAVPLTFETNMVKKYVYSHFWGLQQISTLAGGLTPSYFVWEVVFAISIIGLGLLLFALLIGNIQNFLQGLGRRRLEMLLRSRDVEQWMRHRRLPENLRRRVRQAERYNWAATRGVNEETLLVNLPEDLQIDIRRHLFNFIKKIRIFSLMDEPILDAICERLRQKTYINGSRIMSQGGVVEKMVFVVRGKLESLNGENGIGVSLAEGDACGEELLTWYLEHSSFSRDGKKVRLPGQRLISSRTVKCLTNVEAFSLRAADLEEVTTIFMRSFRSFLVQGPLRYESPYWRSLAATRIQVAWRYWKKRQKLSNQTLKL 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03572 692 CDD CAP_ED 523 640 IPR000595 -
Tsu06g03572 692 Gene3D Jelly Rolls 521 646 IPR014710 -
Tsu06g03572 692 Gene3D Helix hairpin bin 452 515 - -
Tsu06g03572 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 15 689 - -
Tsu06g03572 692 SUPERFAMILY cAMP-binding domain-like 452 644 IPR018490 -
Tsu06g03572 692 PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL PROTEIN 15 689 - -
Tsu06g03572 692 SUPERFAMILY Voltage-gated potassium channels 117 451 - -
Tsu06g03572 692 Pfam Ion transport protein 127 450 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu06g03572 692 Gene3D - 126 447 - -
Tsu06g03572 692 ProSiteProfiles IQ motif profile. 665 692 IPR000048 GO:0005515
Tsu06g03572 692 ProSiteProfiles cAMP/cGMP binding motif profile. 523 592 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03572 Tsu-Chr6 47067482 47074966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03572 45 600 Ion Channels AT3G17700 62.186 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03572 K05391 - ccaj:109789004 999.579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03572 06 47067482 47074966 Tsu06g03572 06 47067482 47074966 ECH