Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03566 ATGGAGTATCACAGTGGAGGAAGTGGGTCCCCTggtgatcatcatcatcatcatcatggtTCTTCTGATtctcagagaagaaagaaacgTTACCACCGTCACACTGCTAATCAGATTCAAAGGCTTGAAGCtaTGTTCAAGGAGTGTCCACATCCTGATGAGAAACAAAGATTGCAGTTAAGCAGAGAATTAGCCTTGGCTCCTAGACAGATCAAATTTTGGTTTCAGAACAGAAGGACTCAGATGAAGGCACAGCATGAAAGAGCTGATAATTGTCAACTAAGGGCAGAGAATGATAAGATAAGATGTGAGAATATTGCTATAAGGGAAGCCCTTAAAAATGTGATCTGCCCCTCTTGTGGTGGACCTCCAATCAATGATGATTGTTATTTTGATGAACAAAAATTGAGGATTGAAAATGCTCAACTCAAAGAAGAGCTTGATAGAGTATCAAGCATTGCTGCTAAATACATAGGAAGACCAATTTCACAGCTTCCACCAGTAACACCAATTCACATATCATCATTGGATTTATCAATGGGAAGTTTTGGTGGACATGGAATGGGTGGAGGACCATCACTTGATCTCGATCTCTTACCAGGAAGTTCATCGACAATGCAGAATGTTCCGTACCAACCGCCTTGTCTTACTGAAATGGAAAAGTCAGTCATGTCTGACATTGCAACAAATGCTATGGATGAATTGGTTAGGCTTTTGCAGACTGATGATCCTTTGTGGATGAAATCAAATACTGATGGAAGAGATGTTCTTAATCTTGATACTTATGATAGAATGTTTCCAAAGGCTAATAATCGGTTGAAGAATCCGAATATTCGTACTGAAGCTTCTAGAGATTCCGGTGTTGTCATCATGAATGGCTTAACTTTGGTTGAAATGTTTATGGATGCGAATAAGTGGATGGAGCTATTTCCTACTATTGTAGCAATGGCAAAGACTATTGAAGTTATAGCTTCTGGAATGATGGGTGGTCACAGTGGTTCTTTGCAGCTGATGTATGAAGAGTTGCAAGTACTGTCACCACTTGTTCCGATTAGAGAATTCTACTTCCTGCGTTACTGTCAACAAATTGAGCAAGGATTATGGGCAATTGTTGATGTTTCATATGATTTTCCTCATGACAACCAATTTGCTCCTCAATTTCGCTGTCATCGTCTTCCTTCTGGCTGCTTCATTCAAGACATGCCTAATGGCTATTCTAAGgTTACTTGGATTGAACATTTGGAGATTGAAGACAAAAATCCAGTTCATAGGCTTTATAGAAATGTTATCTATAGTAGTGCTGCCTTTGGAGCTGAAAGATTTCTCACTACACTTCAGAGAATGTGCGAAAGGCTTGCTTGTCTCATGGTTTCTGCCAATTCTACTGGAAATCTCAGTGGAGtGATACCTTCACCTGAAGGAAAAAGGAGTATGATGAAGCTAGCACAAAGGATGGTAACAAATTTCTGTGCAAGCATAAGTGCATCAGCTAGTCATAGATGGACCACACTTTCAGCTTTGAATGAGATTGGAGTCAGAGTTACTGTGAGAAAGAGTACAGACCCTGGTCAACCTAATGGTGTTGTGCTAAGTGCAGCTACTACCATTTGGCTACCTTTACCTCCACAAACtgttttcaatttcttcaaagaTGAAAGGAAAAGATCTCAGTGGGATGTTCTTTCCAATGGTAATGCTGTTCAAGAAGTTGCTCATATAGCAAATGGTGCACATCCTGGTAACTGCATTTCTGTGCTTAGGgcTTACAACACAAGTCAAAACAACATGTTGATCCTACAAGAAAGCTGTGTAGATTCATCAGGTTCACTTGTAGTCTATTGTCCAGTTGATTTAACAGCAATCAACATGGCAATGAATGGTGAAGATCCTTCATGCATTCCGTTACTCCCTTCCGGTTTCACTATTACATCGGACGGAAACCAAAACGatagcaacaacaacaatattcaaagtggtggtggtggtaatGGTGATGGAGCATCAACAAGTTCAAACACAAACATAGGAAACAAGTCATCAGGTGGATCATTAATAACAGTTGCATTTCAAATTATGGTAAGCAGTTTACCATCTGCAAAACTTAACATGGAGTCTGTTGCAACTGTTAATGGACTTATTGGTGAGACTGTCCAACACATAAAAGCTGCTTTGAATTGTCCTAGTtcttga 2190 0.379 MEYHSGGSGSPGDHHHHHHGSSDSQRRKKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMKAQHERADNCQLRAENDKIRCENIAIREALKNVICPSCGGPPINDDCYFDEQKLRIENAQLKEELDRVSSIAAKYIGRPISQLPPVTPIHISSLDLSMGSFGGHGMGGGPSLDLDLLPGSSSTMQNVPYQPPCLTEMEKSVMSDIATNAMDELVRLLQTDDPLWMKSNTDGRDVLNLDTYDRMFPKANNRLKNPNIRTEASRDSGVVIMNGLTLVEMFMDANKWMELFPTIVAMAKTIEVIASGMMGGHSGSLQLMYEELQVLSPLVPIREFYFLRYCQQIEQGLWAIVDVSYDFPHDNQFAPQFRCHRLPSGCFIQDMPNGYSKVTWIEHLEIEDKNPVHRLYRNVIYSSAAFGAERFLTTLQRMCERLACLMVSANSTGNLSGVIPSPEGKRSMMKLAQRMVTNFCASISASASHRWTTLSALNEIGVRVTVRKSTDPGQPNGVVLSAATTIWLPLPPQTVFNFFKDERKRSQWDVLSNGNAVQEVAHIANGAHPGNCISVLRAYNTSQNNMLILQESCVDSSGSLVVYCPVDLTAINMAMNGEDPSCIPLLPSGFTITSDGNQNDSNNNNIQSGGGGNGDGASTSSNTNIGNKSSGGSLITVAFQIMVSSLPSAKLNMESVATVNGLIGETVQHIKAALNCPSS 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03566 729 MobiDBLite consensus disorder prediction 1 35 - -
Tsu06g03566 729 Pfam Homeodomain 28 83 IPR001356 GO:0003677
Tsu06g03566 729 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Tsu06g03566 729 SUPERFAMILY Bet v1-like 217 452 - -
Tsu06g03566 729 SUPERFAMILY Bet v1-like 472 719 - -
Tsu06g03566 729 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
Tsu06g03566 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 11 727 - -
Tsu06g03566 729 MobiDBLite consensus disorder prediction 644 675 - -
Tsu06g03566 729 Pfam START domain 227 451 IPR002913 GO:0008289
Tsu06g03566 729 Gene3D - 13 101 - -
Tsu06g03566 729 MobiDBLite consensus disorder prediction 20 35 - -
Tsu06g03566 729 CDD START_ArGLABRA2_like 221 450 - -
Tsu06g03566 729 ProSiteProfiles START domain profile. 217 454 IPR002913 GO:0008289
Tsu06g03566 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 11 727 IPR042160 -
Tsu06g03566 729 SMART START_1 226 451 IPR002913 GO:0008289
Tsu06g03566 729 Gene3D - 225 452 IPR023393 -
Tsu06g03566 729 SMART HOX_1 26 89 IPR001356 GO:0003677
Tsu06g03566 729 CDD homeodomain 27 86 IPR001356 GO:0003677
Tsu06g03566 729 Coils Coil 133 153 - -
Tsu06g03566 729 SUPERFAMILY Homeodomain-like 4 85 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03566 Tsu-Chr6 46964419 46969788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03566 23 729 Homeobox Transcription Factor Family AT1G73360 64.706 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu06g03566 START 1.7e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03566 K09338 - gmx:100785023 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03566 06 46964419 46969788 Tsu06g03566 06 46964419 46969788 ECH