Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03563 atggtcaaAGATAGTGgttcaccgCTGAAAACACAAGCTGATATTGTTAGGTTTGTCTCTGTGAAGATTGGCTCTGATTTTGCTTCAATGGAGATTAAGGAACAAGTTGAAGGCACAAAGTCAACTTTAAATGACACAATTAGTAAGTGCAATTCCAAAGGTGGATCACAGTCTGAGAATGTTGCGAAGTCGCAGGATATAACTTCTGTTGCAAACAACCTTACTCCCAAGGTGAGGAAACCGTATACCATCACTAAACAAAGGGAGAAATGGACTGATGAAGAGCATCAAAAGTTTCTCGAGGCTTTGAAATTGTATGGTCGAGGCTGGCGTCAAATTGAAGAACATATAGGATCCAAAACTGCAGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTaagGTTGTGCGGGAACCTGATGGCAGTGCTGAAAGCTCTATTCAGCCAATTGACATACCTCCTCCCCGGCCGAAAAGGAAACCCCTTCATCCATACCCTCGCAAATCCATCGACTCTTTCAAAGGACAGTCGGCCCCGAATGAATCAGAAACATCTCCATCAATTAACCTGTCAGTTGCAGAAAACGACACCCAATCTCCAACCTCCGTACTATCTGCACTTGGTTCTGAAGCATTCGGCTCAGCAGCATTTTCTGAGCAGAATAATAGATGTCTTTCTCCAAATTCTTGCACCACCGAGATTCACCCGGTCAGCTTGTCACCtgttgaaaaagaaaatgatagcCCGACATCCAAACCGTCTGAGGAGGAAGAGAAAGGGTCCCTAGCTTTGGTTCCTTTATCAACAGACTCAAAACCACTTATGTGCTTGAAGTCCGAGATGATTTCTTCCGAGGAAACACAATGTTTCAAAGAAGATGCTGCAAATATGCCACAAGTCACTTGTATTAAGCTGTTTGGTAGAACAGTCTCTATGGTAGGTACTGAGAAGTCaataaatgatgatgatgaaaatattAAGCCAATAGCTATCAAATCTGATGAAATTGTTGAGAATGAAAAGGTAGGCCAAGAAGAGGTATCAGAGCAGCTAGATACACAATTATCACTTAGCACATGTAGTGGTAATTTGCATATAACACCTGATGGAGCTCAAGTGAGAAGCACAGAACAACCGAAGGAAGATATATACGTCGGCGACTGCGCAGCATCTTTACCATTGTGGAGTTTGTACCAAGGCCTTCCATCATTCAACCTCAAGCCATGCAATCATCAGATTATAAATCCTGTGCCTCTTAGACCTTCTTTGAAGATAAGAACAAGAGAGGAGGAAAGTTCTTGCACTGGTTCAAATACTGAATCAGTCTGTGATATGGAAAATCAAAGCAAGAACAACTCATCAGATACCGATGATTCTCAAagtcaaaaacatcatcaagaaGGTGTAGTAATTAAGAAATCTGGAAGAGGGTTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGAAAATTCTTTAATTGTTGGCTTAGAAGAAAGAGAAGGACAAAGAGCTCGTGTGTGTTCATAG 1533 0.396 MVKDSGSPLKTQADIVRFVSVKIGSDFASMEIKEQVEGTKSTLNDTISKCNSKGGSQSENVAKSQDITSVANNLTPKVRKPYTITKQREKWTDEEHQKFLEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPDGSAESSIQPIDIPPPRPKRKPLHPYPRKSIDSFKGQSAPNESETSPSINLSVAENDTQSPTSVLSALGSEAFGSAAFSEQNNRCLSPNSCTTEIHPVSLSPVEKENDSPTSKPSEEEEKGSLALVPLSTDSKPLMCLKSEMISSEETQCFKEDAANMPQVTCIKLFGRTVSMVGTEKSINDDDENIKPIAIKSDEIVENEKVGQEEVSEQLDTQLSLSTCSGNLHITPDGAQVRSTEQPKEDIYVGDCAASLPLWSLYQGLPSFNLKPCNHQIINPVPLRPSLKIRTREEESSCTGSNTESVCDMENQSKNNSSDTDDSQSQKHHQEGVVIKKSGRGFVPYKRCLAERDENSLIVGLEEREGQRARVCS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03563 510 MobiDBLite consensus disorder prediction 137 188 - -
Tsu06g03563 510 PANTHER SWI/SNF COMPLEX-RELATED 32 497 - -
Tsu06g03563 510 SMART sant 87 135 IPR001005 -
Tsu06g03563 510 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 86 135 IPR006447 GO:0003677
Tsu06g03563 510 ProSiteProfiles SANT domain profile. 86 137 IPR017884 -
Tsu06g03563 510 MobiDBLite consensus disorder prediction 40 74 - -
Tsu06g03563 510 MobiDBLite consensus disorder prediction 435 457 - -
Tsu06g03563 510 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Tsu06g03563 510 MobiDBLite consensus disorder prediction 235 266 - -
Tsu06g03563 510 Gene3D - 90 137 - -
Tsu06g03563 510 SUPERFAMILY Homeodomain-like 82 136 IPR009057 -
Tsu06g03563 510 MobiDBLite consensus disorder prediction 428 471 - -
Tsu06g03563 510 CDD SANT 90 133 IPR001005 -
Tsu06g03563 510 MobiDBLite consensus disorder prediction 174 188 - -
Tsu06g03563 510 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Tsu06g03563 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Tsu06g03563 510 PANTHER PROTEIN REVEILLE 7-RELATED 32 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03563 Tsu-Chr6 46914679 46919176 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu06g03563 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03563 - - gmx:778089 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03563 06 46914679 46919176 Tsu06g03563 06 46914679 46919176 ECH