Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03562 ATGGCTAACATTGTTGTTGGAGTAACTTCTCTTCCTCTACTTTCATTAACCTTAACAAACTCAAACACTTTCACTCTCAACTCCAAAATTAAGACCCAAAAACATAATTTCTCCCAAACAAATCACACAACAACCTCATTTTCATCTTCCTTATCATCACTTAGAAACAAAAGTAGTAGCTGTGCTGTGTTGGCTTGTCTTCCTCCTGCTTCTGAATCCTCATCCTCATCTTCCAACACTACACCCTCTTCTAGTTCTCCTTCAACTAAGCTATATATCAGTGGGTTATCGTTTCGCACAACTGAAGAGATCTTGCGAAATGCATTTAAAAATTTCGGGGAACTTGTTGAAGTCAATCTTGTGATGGATAAAGTTGCGAATAGACCAAGAGGGTTTGCTTTCCTTCGTTATGAAACCGAAGCGGAATCGAAGAAAGCTATTGAAGGAATGCATGGAAAGTTCCTGGATGGTAGGGTCATATTTGTGGAAGTGGCCAAACCAAAATCAGAGCTACGGCAGAAATTGAATCAAAACACTACGAAGTAA 546 0.3919 MANIVVGVTSLPLLSLTLTNSNTFTLNSKIKTQKHNFSQTNHTTTSFSSSLSSLRNKSSSCAVLACLPPASESSSSSSNTTPSSSSPSTKLYISGLSFRTTEEILRNAFKNFGELVEVNLVMDKVANRPRGFAFLRYETEAESKKAIEGMHGKFLDGRVIFVEVAKPKSELRQKLNQNTTK 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03562 181 MobiDBLite consensus disorder prediction 69 89 - -
Tsu06g03562 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 160 IPR000504 GO:0003723
Tsu06g03562 181 Gene3D - 26 179 IPR012677 -
Tsu06g03562 181 PANTHER TRANSFORMER-2-RELATED 5 179 - -
Tsu06g03562 181 PANTHER RNA-BINDING PROTEIN 1 5 179 - -
Tsu06g03562 181 SUPERFAMILY RNA-binding domain, RBD 78 176 IPR035979 GO:0003676
Tsu06g03562 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 167 IPR000504 GO:0003723
Tsu06g03562 181 SMART rrm1_1 90 163 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03562 Tsu-Chr6 46909922 46913275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03562 89 178 Eukaryotic Initiation Factors Gene Family AT4G34110 30.851 1.78e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03562 - K13195 gmx:100305561 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03562 06 46909922 46913275 Tsu06g03562 06 46909922 46913275 ECH