Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03560 atgtCACCAGTTGGATTACCACCAGGTTTCAGGTTTCATCCAACTGATGAAGAGCTTGTTAATTATTATCTAAAGAGGAAAATCAATGGTCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTTTACAAATGTGAACCTTGGGAATTAgcagAGAAATCATTTTTACCAAGTAGAGATCCAGAGTGGTACTTTTTCGGACCGCGGGATAGGAAATACCCGAATGGATTCAGAACAAATAGAGCAACAAGAGCAGGATACTGGAAATCTACTGGAAAAGACAGAAAAGTTTCATGCCAAAGTAGACCTATTGGTATGAAGAAGACTTTGGTTTACTATAGAGGCAGAGCTCCTCAAGGAATTAGAACTGATTGGGTCATGCATGAGTATCGTCTTGATGATAAAGAGTGTGAGGACAACACTGGATTACAGGATACTTACGCATTGTGTCGCGTGTTCAAGAAAAACGGTATTTGTTCTGATATGGAAGAGCAACAACCGCAATGTAGTATGTCGTCACTAATCGAATGCTCTCAAACCATAATCAATGAGTGTGAAACGATGTCTCCGGACATACTAGGAGCATCATCTTCATGCTTAGAAGAGGAAGACAAAGATGATTCATGGATGCAATTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGCAACAATGGTTGGTTGTGAAGAAGTTTCACATGTTACATTTACAAACTAA 723 0.3817 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNTGLQDTYALCRVFKKNGICSDMEEQQPQCSMSSLIECSQTIINECETMSPDILGASSSCLEEEDKDDSWMQFITEDAWYSSNAATMVGCEEVSHVTFTN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03560 240 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Tsu06g03560 240 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Tsu06g03560 240 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Tsu06g03560 240 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 240 - -
Tsu06g03560 240 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 240 - -
Tsu06g03560 240 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03560 Tsu-Chr6 46857887 46862423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03560 1 227 NAC Transcription Factor Family AT3G17730 77.083 1.50e-132 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu06g03560 NAM 8.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03560 - - gmx:100788036 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03560 06 46857887 46862423 Tsu06g03560 06 46857887 46862423 ECH