Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03556 ATGGTTAGGAAGAAGAGAACTGATGGACCTAGTGGTGCCGAAAGCTCTGATGGTCAACAAAGGAGTGCGCCacctcaacaacaacaacaagctGCTGTAACTGGAGGTGCAGGACCCCAAGGAGGTCGGGCCTGGGCTCCCCAAGGTGGACGTGGGGATTATGGTGGCCGCGGGGATTATGGAGGTGGTCGTGGTGATTATGGAGGTGGTCGTGGGGATTATGGAGGTGGACGAGGTGGTTATGGTGGTGGCCGTGGTGGTCGTGGGAATCCCCAACAGCAGTATGGTGGGCCTCCTGAGTATCAAGGAAGGGGAAGGGGAGGACCTCCTCAGCCACAACAGCAGTATGGTGGCCCACCTGAGTATCAAGGTAGAGGCAGGGGAGGGCCTTCTCAGCAAGGAGGCCGTGGTTATGGTGGTGGTCGTGGTGGATACGGTGGTGGTGTGGGTGCTGGTGGTGGCCATGACGTAGTTCCTTCATATGGCGGCCCACCGAGGCAAATTGTACCCGAGCTGCACCAAGCAACCTCAGTTCCATCTGCACCATATCAAGCTGTGGTGTCTCCTCCACCTGCACCTCAATCTGAGGCAAGTTCATCATCACAGCCACCTGAAGTGTCTGAAGTGGCAGAGGAACTGGGACAGATGACAATTCATTCTGAAGAGACTCCTGCTCCTCCTCCAGCAAGTAAATCATCATTGAGGTTTCCCCTTCGACCTGGAAAAGGGAACTCTGGTAAACGATGTGTTGTTAAGGCAAACCATTTCTTTGCTGAGTTGCCGAAGAAAGATCTACATCAGTATGATGTCACAATTACTCCAGAAGTGACATCTAGAGGTGTGAACCGGGCTGTTATGGAGCAGCTTGTGAGGTTGTATCGTGAATCTCACTTAGGAAAGAGACTTCCTGCTTATGATGGCCGCAAGAGCCTCTATACTGCCGGGCCACTTCCTTTTATCTCTAAGGACTTTAGAATCACCCTGGTGGATGAGGATGATGGTTCAGGAGGGCAAAGGAGGGATAGGGAATTCAAAGTTGTGATAAAATTGGCTGCACGTGCAGACCTTCACCACCTGGGGCTCTTTTTAGAGGGAAGGCAAACTGATGCACCCCAGGAAGCTCTGCAAGTTCTTGACATTGTTCTCCGCGAGCTTCCTACTTCAAGGTATTGTCCAGTTGGAAGATCGTTTTATTCACCTGATCTGGGTAGAAGGCAGCCTCTTGGTGAGGGATTGGAAAGTTGGCGCGGTTTCTATCAAAGCATCCGACCCACCCAAATGGGTCTGTCATTGAACATTGatATGTCTTCAACTGCTTTTATTGAGCCATTGCCTGTGATTGATTTTGTTACTCAGTTGCTGAATAGGGATGTCTCGGCCCGGCCTCTGTCTGATGCTGATAGAGTAAAGATCAAAAAAGCACTCCGTGGTATCAAAGTTGAAGTTACACATCGTGGTAACATGAGGAGGAAGTATCGTATCTCTGGTCTGACTTCACAAGCTACTAGAGAGTTGACGTTCCCCGTGGACGAGAGGGGTACTATGAAGTCTGTTGTTGAGTATTTCTATGAGACATATGGTTTTTCCATTCAACATACCCAGTGGCCTTGTTTGCAAGTGGGCAACACACAGAGACCAAACTACCTTCCAATGGAGGTATGCAAGATTGTGGAGGGCCAAAGGTACTCCAAGCGTCTCAATGAAAGGCAGATTACTGCTCTACTAAAAGTCACTTGTCAGCGACCCCTTGATAGGGAACGTGATATCATGCAGACAGTACGCCACAATGCATATCATGAAGATCCTTATGCTAAAGAGTTTGGAATTAAAATCAGTGAGAAGCTTGCACAAGTCGAAGCTCGCATCCTTCCTCCACCTTGGCTAAAATATCATGATACCGGTAAAGAGAAGGATTGTCTACCCCAAGTTGGCCAGTGGAATATGATGAATAAgAAAATGGTCAATGGAGGAACAGTCAACCACTGGTTCTGTGTGAACTTTTCAAGGAATGTGCAAGACAGTGTTGCACGGGGCTTTTGCTCTGAACTTGCCCAGATGTGTTATGTATCTGGCATGGCATTTAATCCAGAGCCAGTTGTTCCTCCACTTAGTGCTCGTCCTGACCAAGTTGAAAAGGTTCTGAAAACGCGTTATCATGATGCGAAGAACAAGCTGCAGGGGAGGGAGCTTGACTTGCTCATTGTCATTTTGCCAGATAATAATGGCTCTCTCTATGGTGATCTGAAACGTATATGTGAGACCGACCTGGGGGTTGTTTCCCAGTGTTGTTTAACAAAACATGTATTTAAGATGAGCAAGCAGTACCTTGCAAATGTGGCATTGAAAATCAATGTTAAGGTTGGAGGTAGGAATACCGTGCTTATTGATGCACTTTCACGACGCATTCCACTAGTCAGTGACAGGCCTACAATTATTTTTGGAGCTGATGTGACTCATCCACACCCTGGCGAGGATTCTAGCCCATCAATAGCAGCTGTTGTTGCTTCTCAAGATTGGCCGGAAGTTACCAAGTATGCTGGTTTGGTTTGTGCCCAAGCCCATCGGCAAGAGCTCATCCAAGACCTTTTCAAACAGTGGCAAGATCCAGTCAGAGGAACATTGACTGGTGGAATGATCAAgGAGCTTCTTATATCATTCCGCAGAGCTACTGGGCAAAAGCCCCAGCGCATCATATTTTACAGAGATGGGGTGAGCGAGGGGCAGTTTTACCAAGTCCTGTTGTTTGAGCTTGATGCAATCCGGAAGGCTTGTGCTTCTCTTGAACCCAACTACCAGCCTCCTGTGACTTTTGTGGTGGTCCAGAAACGTCACCATACTAGGCTCTTTGCCAGTAACCACAATGATAAAAGTTCTGTCGATCGTAGTGGCAACATATTACCCGGCACAGTTGTGGATTCTAAGATTTGTCATCCGACTGAATTTGACTTCTATCTTTGCAGTCATGCTGGAATTCAGGTAAACTCTTGCTTCTTTTGTTGGCATAGTAAAAGTTGGGTTATTATTGTATTCTTATGTCAAATTAATTTGCAGGGTACTAGCCGTCCAGCTCATTACCATGTTTTATGGGATGAAAATAACTTCAGTGCTGATGCTTTACAAAGTCTAACTAACAACTTGTGCTACAcATATGCCCGATGCACCCGATCTGTTTCAATTGTGCCTCCTGCATATTATGCTCATTTAGCTGCATTCCGTGCGAGGTTCTATATGGAACCTGAGACTTCAGATAGCGGGTCTATGACTAGTGGTGCTGTGTCTCGGGGTGGGATGGGAGCAGCAGCAGGACGTAGTACTCGTGCACCTGGAGCTAATGCTGCTGTGAGACCCCTGCCAGCATTGAAGGAGAATGTCAAGAGGGTCATGTTTtattgctga 3396 0.4723 MVRKKRTDGPSGAESSDGQQRSAPPQQQQQAAVTGGAGPQGGRAWAPQGGRGDYGGRGDYGGGRGDYGGGRGDYGGGRGGYGGGRGGRGNPQQQYGGPPEYQGRGRGGPPQPQQQYGGPPEYQGRGRGGPSQQGGRGYGGGRGGYGGGVGAGGGHDVVPSYGGPPRQIVPELHQATSVPSAPYQAVVSPPPAPQSEASSSSQPPEVSEVAEELGQMTIHSEETPAPPPASKSSLRFPLRPGKGNSGKRCVVKANHFFAELPKKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFISKDFRITLVDEDDGSGGQRRDREFKVVIKLAARADLHHLGLFLEGRQTDAPQEALQVLDIVLRELPTSRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSARPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFSIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPLDRERDIMQTVRHNAYHEDPYAKEFGIKISEKLAQVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWFCVNFSRNVQDSVARGFCSELAQMCYVSGMAFNPEPVVPPLSARPDQVEKVLKTRYHDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLIDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKQWQDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHNDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQVNSCFFCWHSKSWVIIVFLCQINLQGTSRPAHYHVLWDENNFSADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVSRGGMGAAAGRSTRAPGANAAVRPLPALKENVKRVMFYC 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03556 1131 MobiDBLite consensus disorder prediction 191 206 - -
Tsu06g03556 1131 Pfam Argonaute linker 2 domain 584 630 IPR032472 -
Tsu06g03556 1131 SUPERFAMILY Ribonuclease H-like 618 1082 IPR012337 -
Tsu06g03556 1131 SUPERFAMILY PAZ domain 251 592 IPR036085 GO:0005515
Tsu06g03556 1131 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1010 1130 - -
Tsu06g03556 1131 PANTHER PROTEIN ARGONAUTE 1A 133 996 - -
Tsu06g03556 1131 SMART DUF1785_2 391 443 IPR014811 -
Tsu06g03556 1131 PANTHER PROTEIN ARGONAUTE 1A 1010 1130 - -
Tsu06g03556 1131 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 133 996 - -
Tsu06g03556 1131 Pfam Argonaute linker 1 domain 392 442 IPR014811 -
Tsu06g03556 1131 CDD PAZ_argonaute_like 443 557 - -
Tsu06g03556 1131 Pfam PAZ domain 448 573 IPR003100 GO:0005515
Tsu06g03556 1131 Pfam Glycine-rich region of argonaut 117 224 IPR024357 -
Tsu06g03556 1131 Gene3D - 622 795 - -
Tsu06g03556 1131 Pfam N-terminal domain of argonaute 247 382 IPR032474 -
Tsu06g03556 1131 ProSiteProfiles Piwi domain profile. 732 1078 IPR003165 GO:0003676
Tsu06g03556 1131 Gene3D paz domain 437 562 - -
Tsu06g03556 1131 SMART Piwi_a_2 732 1078 IPR003165 GO:0003676
Tsu06g03556 1131 Gene3D - 801 1131 IPR036397 GO:0003676
Tsu06g03556 1131 CDD Piwi_ago-like 602 1077 IPR045246 -
Tsu06g03556 1131 ProSiteProfiles PAZ domain profile. 444 558 IPR003100 GO:0005515
Tsu06g03556 1131 Pfam Mid domain of argonaute 641 716 IPR032473 -
Tsu06g03556 1131 MobiDBLite consensus disorder prediction 12 35 - -
Tsu06g03556 1131 MobiDBLite consensus disorder prediction 1 241 - -
Tsu06g03556 1131 Pfam Piwi domain 733 992 IPR003165 GO:0003676
Tsu06g03556 1131 Pfam Piwi domain 1011 1077 IPR003165 GO:0003676
Tsu06g03556 1131 SMART PAZ_2_a_3 448 580 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03556 Tsu-Chr6 46791000 46799165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03556 121 1131 Eukaryotic Initiation Factors Gene Family AT1G48410 79.056 0.0 1626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03556 K11593 - gmx:100780375 1738.39