Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03542 ATGGACAAAATGGATATTACCTCAAATGGAGCAAACATGAACCCGTCACGCGTACCTAGATTTGAGCTAGGGCACGTTTCTTCTGTCTCACTCTCTCCGCGGCCTTCTCTCAGATTTGCGCCGCTACGgTTATTCGTTCCTTATTGTTCAGAGATGGCTGATGCTCATGATACTGATAAGAACATTGAGGTGTGGAAAATCAAGAAATTGATCAAGGCTCTTGAAGCTGCCAGAGGAAATGGGACAAGTATGATTTCCCTTATCATGCCCCCACGTGATCAGATTGCCCGTGTTACCAAGATGCTTGGTGATGAGTTTGGAACTGCTTCAAACATCAAAAGTAGGGTGAATCGACAGTCTGTGCTTGGTGCAATCACTTCTGCTCAGCAGAGGCTTAAGCTTTATAACAAGGTTCCTCCAAATGGCCTTGTTTTGTATACTGGCACAATTGTGACTGATGATGGGAAGGAGAAAAAGGTGACCATTGATTTTGAACCATTTAGACCTATCAATGCGTCACTCTATCTTTGTGACAACAAGTTTCACACTGAAGCTCTAAACGAGCTCCTGGAATCTGATGACAAGTTTGGATTTATTGTCATGGATGGTAATGGCACTCTGTTTGGAACTTTGAGTGGTAATACAAGAGAGGTGCTTCACAAGTTCAGTGTGGATCTACCGAAGAAACATGGAAGAGGAGGGCAATCAGCTCTACGTTTTGCCCGTCTTCGTATGGAGAAGCGTCATAACTATGTGAGGAAGACTGCTGAGCTTGCAACCCAATTTTATATCAATCCCGCTACCAGTCAGCCTAATGTTTCTGGATTAATTCTTGCTGGTTCTGCTGATTTTAAAACCGAGCTTAGTCAGTCAGATATGTTTGATCCACGTCTTCAGGCAAAGATACTTAATGTTGTTGATGTATCTTATGGAGGGGAGAATGGGTTTAATCAGGCTATTGAATTATCTGCTGAAATTCTGTCCAATGTCAAGTTTATTCAGGAGAAACGATTGATTGGAAAATACTTTGAGGAAATCAGTCAGGATACGGGGAAGTATGTCTTTGGTGTTGATGATACTCTACAAGCTCTGGATGCAGGAGCTGTCGAGACACTTATTGTGTGGGAAAATCTGGATATGACTAGGtatgttttgaaaaatactACTACTGGTGAAGTTGTCATTAAGCACTACAACAAGGAACAGGAAGCCAACCAGAGCAACTTTAGAGATCCCGAAACCAATGCTGATTATGAGGTTCAGGAAAAGCTATCTCTGTTGGAGTGGTTTGCAAATGAATACAGAAAGTTTGGTTGCACTCTCGAGTTTGTCACTAATAAATCACAAGAAGGTTCACAGTTTTGCAGAGGTTTTGGTGGGATAGGTGGGATCTTGCGTTACCAGCTTGATATGAGAacttttgatgatttttctgatGATGGAGGTGTGTATGAAGACGAATAG 1464 0.4146 MDKMDITSNGANMNPSRVPRFELGHVSSVSLSPRPSLRFAPLRLFVPYCSEMADAHDTDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQIARVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLQALDAGAVETLIVWENLDMTRYVLKNTTTGEVVIKHYNKEQEANQSNFRDPETNADYEVQEKLSLLEWFANEYRKFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRTFDDFSDDGGVYEDE 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03542 487 Gene3D eRF1 domain 1 48 186 IPR024049 -
Tsu06g03542 487 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 52 486 - -
Tsu06g03542 487 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 64 468 IPR004403 GO:0003747|GO:0006415
Tsu06g03542 487 SMART eRF1_1_2 55 191 IPR005140 -
Tsu06g03542 487 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 52 486 IPR004403 GO:0003747|GO:0006415
Tsu06g03542 487 SUPERFAMILY L30e-like 329 471 IPR029064 -
Tsu06g03542 487 SUPERFAMILY Translational machinery components 193 327 - -
Tsu06g03542 487 Pfam eRF1 domain 1 69 189 IPR005140 -
Tsu06g03542 487 Gene3D eRF1 domain 2 187 328 IPR042226 -
Tsu06g03542 487 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 57 191 IPR024049 -
Tsu06g03542 487 Pfam eRF1 domain 3 332 469 IPR005142 -
Tsu06g03542 487 Pfam eRF1 domain 2 195 328 IPR005141 -
Tsu06g03542 487 Gene3D - 330 487 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03542 Tsu-Chr6 46612063 46618490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03542 52 486 Eukaryotic Initiation Factors Gene Family AT3G26618 90.115 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03542 K03265 - gmx:100785916 829.706