Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03538 atgagAGAGAATGTAGAGAGAGAAGCTGTGGGCAAGCCTGGAAGCTCAAAGGCCGGCTCGGTGGTTAGGAAGGGTTTCATCCATAATCTGGACAGGGTGACAACCTCTTTCTACATCACAAACTTTCCGAAGGAGGCCACGTCTGAAGATCTTTGGAAGTTGTTTTTGAAGTTTGGAAGGGTGGGTGAGGTTTATATTCCAAAGAAGCTTGATATCAGGGGAAGGAGATTTGGCTTTGTCAAGTTTAAGGAGGTAGAGGATGTGGAAGCGCTTGGAGAAAGTTTAAGGAATGTCTGGATTGGATCCTTCAAACTTCGAATAAACCGCTCTAGGTTTAGTCGATCGGATGCCAAAGAAGACCTCTCTAAGCAACCTCCTCCTCGTCGGCATGTTACACTATCGGAGGAAACGAAGGCAGGTAAATCGTTCAGAGCTGCGCTGGTAGGTGGGCCGGTGGGTGGTGCTGCTGGGGTGAAGAGTACGGTGCTGAAGGTTCCTATCAATGAATCTCTGTGTAAAGAACTTCAAAGTAGCGTGGTTGGTATTTTGAGAAGGGAAAAGGACGTTGGGAGGATACAAACTACTCTCTTTATAGAGGGTTTTTCATCGGTGTTAGTTACACACATGGGAGGGAATATGGCGTTACTTAGAAGCTCGGTGGAAGGCGATGTGGATAGGATGTTGAGGAGGAAGAAGGAAACGTTGGAGTATTACTTCCGGGAGTTAAAACCTTGGAACCCTGGCCTCTTTGCTACTAATAGGGAGGTCTAG 771 0.4682 MRENVEREAVGKPGSSKAGSVVRKGFIHNLDRVTTSFYITNFPKEATSEDLWKLFLKFGRVGEVYIPKKLDIRGRRFGFVKFKEVEDVEALGESLRNVWIGSFKLRINRSRFSRSDAKEDLSKQPPPRRHVTLSEETKAGKSFRAALVGGPVGGAAGVKSTVLKVPINESLCKELQSSVVGILRREKDVGRIQTTLFIEGFSSVLVTHMGGNMALLRSSVEGDVDRMLRRKKETLEYYFRELKPWNPGLFATNREV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03538 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 112 IPR000504 GO:0003723
Tsu06g03538 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 34 254 - -
Tsu06g03538 256 SMART rrm1_1 36 108 IPR000504 GO:0003723
Tsu06g03538 256 PANTHER RNA RECOGNITION MOTIF 34 254 - -
Tsu06g03538 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 105 IPR000504 GO:0003723
Tsu06g03538 256 CDD RRM_SF 38 108 - -
Tsu06g03538 256 SUPERFAMILY RNA-binding domain, RBD 34 124 IPR035979 GO:0003676
Tsu06g03538 256 Gene3D - 34 114 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03538 Tsu-Chr6 46554580 46555350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03538 19 121 Eukaryotic Initiation Factors Gene Family AT1G34140 29.204 3.07e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03538 - - mtr:MTR_5g065250 155.221