Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03533 ATGAACGGGAAAGCTTATGTTTCTAAGGAACTTCATGCTAAACACACCAAGATCTTAGAGGGACTTCTTAAGCTACCTGACAACAGGGAATGTGCAGACTGTTGGACCAAgGCACCACGATGGGCTAGTGTGAACTTAGGAATTTTCATTTGCATGCAATGTTCAGGGATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGAGGTCAACAACTTTGGATACATGGTTGCCAGAACAAGTTTCTTTCATGCAATATATGGGTAATGTGAAGTCAAATAAGCACTGGGAAGCTAAACTGCCACCAAATTTTGACAGAAATGGATATGGAATCGAGAAGTTTATCCGTGCCAAATATGTGGAGAAAAGATGGGCTTTACAAGGAGAACTACAAGCTATAAAGTCAGCTGAAATGCCGGTTGACTTCAAAGTATCACAAACTACTGGTGCCACGAATGGTATTCAAAGAAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAATCACATGGCACAAATTCGGCCTCCAATGCCAAAATTTAACGAGGGTCCCTTAGatttaaaaaagaagaattcACCGCCAATAAAGAGGCCATCAGTATCACTTGATTTTGATAAACCCATTGGAAATAGCAACGTTACCATTGATCTTTTTAACTTGCTTTCCTTCGACGACAATAAACAGAATATATCAACTACACCTGCTAGCTGGACAACATTTGATTGTAAGATTACATTACCTGTAGTATCACATCTTCTGAATCTTTGTTCTATTTTCTTTGATTCACATGGTTTATGTTATGCACTTGGAAATTATTAA 822 0.382 MNGKAYVSKELHAKHTKILEGLLKLPDNRECADCWTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVSFMQYMGNVKSNKHWEAKLPPNFDRNGYGIEKFIRAKYVEKRWALQGELQAIKSAEMPVDFKVSQTTGATNGIQRNRRLSLEESILVNHMAQIRPPMPKFNEGPLDLKKKNSPPIKRPSVSLDFDKPIGNSNVTIDLFNLLSFDDNKQNISTTPASWTTFDCKITLPVVSHLLNLCSIFFDSHGLCYALGNY 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03533 273 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Tsu06g03533 273 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Tsu06g03533 273 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Tsu06g03533 273 SMART arf_gap_3 16 132 IPR001164 GO:0005096
Tsu06g03533 273 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 247 - -
Tsu06g03533 273 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Tsu06g03533 273 Pfam Putative GTPase activating protein for Arf 17 126 IPR001164 GO:0005096
Tsu06g03533 273 CDD ArfGap 19 119 - -
Tsu06g03533 273 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Tsu06g03533 273 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Tsu06g03533 273 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 247 IPR044520 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03533 Tsu-Chr6 46498828 46502697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03533 19 119 C2H2 Transcription Factor Family AT4G05330 51.402 6.31e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03533 K12486 - gmx:100802691 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03533 06 46498828 46502697 Tsu06g03533 06 46498828 46502697 ECH