Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03529 ATGGAGCAGCAAAGATTAGCGACAATAGAGCAGGATGTGGTGGGGTACTGCGGAATGAAACTGATATTTAAGGCACTTGGAGATACCACTGCGTATATGGCTGAGTTATGGGGTATTTATGAAGGCTTGCGCCTTGCTCGGAGAAGAGAGGTGACAATATTAGAACTGCGCACCAATTCACAAATCATTGCGCAAAGTTTGCAGGATAATAAGAGGGGTAGTAATATGGGATGTACCCTTATGAAGAAGATTAGAAGATTGTTGGAAGAGCTGTGGGAAGTTCAAATTACTCATGTCTTTAGGGAATCTAAGAGATGTGCGGATATGCTTGCCAACATGGGTAGTGAAAGGGCTATTGGGATTGAGTTTTTTGCCAACCCTCCCCCAACTCCAAGGGTGATGCAAATTGTTGATGTTTCTCCTCCTTCctttaaaacttttgaagagCTACAAAGGAGAGAAATAGATTATGCAGGTAGAGACGGTGCTTCTAGCTTAGCCTCTGTTGTGAAAGATACTCTATGTGCCCAAATTTGGTTTAGATGTGCTGGGTCATTATACATCCCTAAGATTGGGGAGAAAGTTTTCTACTTCCTTCAAGGACACATGGAACATGTTCTAtcttcttttccattttttatattatga 648 0.3997 MEQQRLATIEQDVVGYCGMKLIFKALGDTTAYMAELWGIYEGLRLARRREVTILELRTNSQIIAQSLQDNKRGSNMGCTLMKKIRRLLEELWEVQITHVFRESKRCADMLANMGSERAIGIEFFANPPPTPRVMQIVDVSPPSFKTFEELQRREIDYAGRDGASSLASVVKDTLCAQIWFRCAGSLYIPKIGEKVFYFLQGHMEHVLSSFPFFIL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03529 215 PANTHER OS06G0683500 PROTEIN 26 120 - -
Tsu06g03529 215 CDD RNase_H_like 24 112 IPR044730 -
Tsu06g03529 215 Gene3D - 10 116 IPR036397 GO:0003676
Tsu06g03529 215 Pfam Reverse transcriptase-like 26 113 IPR002156 GO:0003676|GO:0004523
Tsu06g03529 215 SUPERFAMILY Ribonuclease H-like 19 112 IPR012337 -
Tsu06g03529 215 PANTHER OS05G0353850 PROTEIN 26 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03529 Tsu-Chr6 46460334 46462963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03529 158 210 B3 DNA Binding Superfamily AT1G59750 38.889 7.25e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03529 - K03283 aip:107620837 79.3369