Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03528 ATGTCTTCTACCGGCGGCGACGAAAATCCTCATACCGGCGTTAACTCCGACGAACTTCGCCGTTACTTTTGCCACCAGTGCCAACGCACAGCTTTCATTTCCACGTCATCCTCCGATCTAATCTGTCCCAATTGCAACGGTACTTTCCTCGAAGAACTCGAAACTCCAATCCCTAACCCTAATCCCAATCCTCTCCCTCCGTTCTTCTCCGACACCACAACCGATTTCCCCGCCGCAGGATTCTCTTTCCCCCTCATTTTCTCTGGTGCCGGCGCCACCAACGCTTCTCAACCGTTCAATGATCTCTCCGCTTTATTATCATCTCCGGCACCGCCTTCACCTTTCGGCGAAGCTTTTAACCCTGTCGCGTTTATTCAAAACTACCTCCGAAACATGAATGCCGGAGGAGGCAACGTTCAGTTCTTCATCAACGATGCTGACGATCCGGCGAGACAGTTCCGGTTTCCCGGAAACGCTAATCCGGGAGATTATTTCTTTGGACCTGGACTTGAGGATCTGATCCAGCAATTAGCAGAGAACGATCCTAATCGGCGTGGGACACCGCCGGCGTCGAAGTCCGCAGTAGAAAAGCTTCCGGTTATTGAAGTTACCGAGGAGCTGCTGGAATCGGATTCATCGCAGTGTGCTGTGTGTAAAGACACATTTGACCTTGGCGAAAAGGCAAAGCAGATGCCGTGTAAGCATATATATCATACTGATTGTATCTTGCCATGGTTGGAATTGCATAATTCTTGTCCTGTTTGTCGTCATGAGTTGCCTACAGATGATCCTGATTATGAGCAGAGGGCTCATGGTGGTGGCGGAGGCGgtgctggtggtggtggtggaggaggagATGATTCAATGAGAACAAGGTTTAGGGTGTCTTTGCCATTTATGCCGTTTAGGCATGTACCTTCTTCTTCTGGAGCTGCTGCAGGGACAAGTAATGTTGGGAATGTTAATAACAATGATAACAACAATAGCAATAGTGGAAATAATAATGAGCAATCCAATACTGAAAATAGGGGAAATCAGAATTTTGAGTCAGGGACTAGGCAAGAAGATCTTGACTGA 1077 0.467 MSSTGGDENPHTGVNSDELRRYFCHQCQRTAFISTSSSDLICPNCNGTFLEELETPIPNPNPNPLPPFFSDTTTDFPAAGFSFPLIFSGAGATNASQPFNDLSALLSSPAPPSPFGEAFNPVAFIQNYLRNMNAGGGNVQFFINDADDPARQFRFPGNANPGDYFFGPGLEDLIQQLAENDPNRRGTPPASKSAVEKLPVIEVTEELLESDSSQCAVCKDTFDLGEKAKQMPCKHIYHTDCILPWLELHNSCPVCRHELPTDDPDYEQRAHGGGGGGAGGGGGGGDDSMRTRFRVSLPFMPFRHVPSSSGAAAGTSNVGNVNNNDNNNSNSGNNNEQSNTENRGNQNFESGTRQEDLD 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03528 358 SUPERFAMILY RING/U-box 195 262 - -
Tsu06g03528 358 MobiDBLite consensus disorder prediction 309 352 - -
Tsu06g03528 358 MobiDBLite consensus disorder prediction 265 291 - -
Tsu06g03528 358 MobiDBLite consensus disorder prediction 308 358 - -
Tsu06g03528 358 Pfam zinc-ribbon 21 53 IPR039525 GO:0061630
Tsu06g03528 358 SMART ring_2 215 255 IPR001841 -
Tsu06g03528 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 14 291 - -
Tsu06g03528 358 Coils Coil 353 358 - -
Tsu06g03528 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 291 - -
Tsu06g03528 358 CDD RING-H2_RNF126_like 214 256 - -
Tsu06g03528 358 Pfam Ring finger domain 214 256 IPR001841 -
Tsu06g03528 358 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
Tsu06g03528 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 262 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03528 Tsu-Chr6 46429164 46434777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03528 156 268 C3H Transcription Factor Family AT5G01980 51.327 1.38e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03528 - K11982 mtr:MTR_6g079660 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03528 06 46429164 46434777 Tsu06g03528 06 46429164 46434777 ECH