Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03500 ATGGATGTGAAAGTGTCGAGGGTTAGTAAAACGGTTCCGACTACATGCATCTACTGGCTTGCCGGAAGATGCAACAGACATCCTTGTAGATTTCTGCACTGCAAACTACCATCTTCTTGTAATTCTTCTTTTTCCAAACATAATACTAAGACAGTCTTGAATAAAACGATCGGAGATGACAAAGACAAGACACAACTTGTTGAGGCTTCCCTTTCGAAACATAATACTGTGACGGATAAGACTATTGATGATAGAGACAGTGCACAAGTTGCTGAGGTTTCTCAAAATACTTCACTAAGTATATGCAAATATTGGATTAATGACAGCTGTGTTCACGGTGATCAGTGCCGAAATTTACATTCGTGGTTTTATGGTGATGGGTTTACCACAATAGCAAAGCTTCAAGGACACAAGAAGGTTATCACTGGAATGACAATTCCTCGTGGATCAGACAAACTTTGTACAGGCAGCACTGATGGGACAGTTCGAACATGGGACTGCCATACTGGGCAATGTGTTAATGTGGAAAATCTTGGCAGTGAAGTTACCTCTTTGATCAGCGAGGGCCCGTGGATGTTTGTTGGTTTGCTAAACACTGTCATGGCATATAATATTCAGACTGCTTCACTGTATACTCTTGATGGACCTATCGGGCAAGTCCGTGCCATGATTGTTGGCAATGATACAGTTTTAGCAGGAGCAGAGAATGGTGTAATTTCTGCATGGAGAGGCAGCTCTGAAGCCAATTCACCTTTTAAACTTGTTGCATCACTGCATGGCCACACTAAATCTGTTGTGTGCCTTGCCATTGGAGCCCTCACAATGCTGTATTCAGGATCCGAGGACCAAAGCATTAAGGTTTGGGACCTTAACTCATTTGAGTGTAAGATGACACTCAATGCACATACAGATGCAGTCACATCTCTTATTTGTTCGAAAAACGTCTTGTTATCCGGTTCATCTGATTGTACCATTAAGGCCTGGTTTCAAACCGAAGAGGGGAGTTTAGAAGTGATACATTCACACAATGTGGAAAATGGTGTTGTTGCACTCTCTGGCATGAATGATCCAGATAGTAAGCCTGTATTGTTATGTTCTACCAGAGACAATTCGGTTCGCCTCTATGAACTTCCATCATTTGTCGAGAGGGGTAGATTGTTTGCAAAGCAAGAAGTTGGATTAATTGATGTAGCTCCTGGTGGACTCTTTTTCACTGGAGACAGAACTGGGTTGCTGACAGTCTCGAAATGGTTGGGAGAGTACAAGGATGTAGATCCTCTCGAGACTTGA 1290 0.4256 MDVKVSRVSKTVPTTCIYWLAGRCNRHPCRFLHCKLPSSCNSSFSKHNTKTVLNKTIGDDKDKTQLVEASLSKHNTVTDKTIDDRDSAQVAEVSQNTSLSICKYWINDSCVHGDQCRNLHSWFYGDGFTTIAKLQGHKKVITGMTIPRGSDKLCTGSTDGTVRTWDCHTGQCVNVENLGSEVTSLISEGPWMFVGLLNTVMAYNIQTASLYTLDGPIGQVRAMIVGNDTVLAGAENGVISAWRGSSEANSPFKLVASLHGHTKSVVCLAIGALTMLYSGSEDQSIKVWDLNSFECKMTLNAHTDAVTSLICSKNVLLSGSSDCTIKAWFQTEEGSLEVIHSHNVENGVVALSGMNDPDSKPVLLCSTRDNSVRLYELPSFVERGRLFAKQEVGLIDVAPGGLFFTGDRTGLLTVSKWLGEYKDVDPLET 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03500 429 PANTHER - 9 421 IPR044715 -
Tsu06g03500 429 SUPERFAMILY WD40 repeat-like 128 417 IPR036322 GO:0005515
Tsu06g03500 429 ProSitePatterns Trp-Asp (WD) repeats signature. 276 290 IPR019775 -
Tsu06g03500 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 328 IPR001680 GO:0005515
Tsu06g03500 429 Gene3D - 108 249 IPR015943 GO:0005515
Tsu06g03500 429 Gene3D - 250 420 IPR015943 GO:0005515
Tsu06g03500 429 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 9 421 - -
Tsu06g03500 429 PRINTS G protein beta WD-40 repeat signature 153 167 IPR020472 -
Tsu06g03500 429 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
Tsu06g03500 429 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Tsu06g03500 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 292 - -
Tsu06g03500 429 SMART c3hfinal6 10 35 IPR000571 GO:0046872
Tsu06g03500 429 SMART c3hfinal6 96 122 IPR000571 GO:0046872
Tsu06g03500 429 SMART WD40_4 251 289 IPR001680 GO:0005515
Tsu06g03500 429 SMART WD40_4 335 376 IPR001680 GO:0005515
Tsu06g03500 429 SMART WD40_4 127 166 IPR001680 GO:0005515
Tsu06g03500 429 SMART WD40_4 206 243 IPR001680 GO:0005515
Tsu06g03500 429 SMART WD40_4 292 329 IPR001680 GO:0005515
Tsu06g03500 429 SUPERFAMILY CCCH zinc finger 97 121 IPR036855 GO:0046872
Tsu06g03500 429 ProSiteProfiles Zinc finger C3H1-type profile. 96 123 IPR000571 GO:0046872
Tsu06g03500 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 175 IPR001680 GO:0005515
Tsu06g03500 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 298 IPR001680 GO:0005515
Tsu06g03500 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 134 166 - -
Tsu06g03500 429 Pfam WD domain, G-beta repeat 294 328 IPR001680 GO:0005515
Tsu06g03500 429 Pfam WD domain, G-beta repeat 131 166 IPR001680 GO:0005515
Tsu06g03500 429 Pfam WD domain, G-beta repeat 253 289 IPR001680 GO:0005515
Tsu06g03500 429 ProSiteProfiles Zinc finger C3H1-type profile. 10 36 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03500 Tsu-Chr6 46143745 46145833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03500 122 324 Eukaryotic Initiation Factors Gene Family AT2G46290 24.444 5.53e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03500 - - mtr:MTR_8g028700 587.8