Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03490 ATggcttcatcttcatcttctttcaaCAATGGATATGTTTACCATGTTTTCTTAAGCTTTAGAGGCGAAGATACACGCGAAACATTTACCGGCCATCTTTACAATGCTCTTGATCAAAGGGGAATCAACACCTTTATAGATGATGAAGGGTTAAGGATAGGAGAAGAAATTTCACAATCTCTTCTTAAAGCAATAGAAGAGTCAAGGATTTCAATCATTATATTCTCAAAGAATTATGCTAATTCCACTTGGTGCCTTGATGAACTTGTCAAGATTCTCGAGTGTAAGAAAGCGAAAGGACAAATTGTTTGctcaattttttataacattatTCCTTCAGATGTGAGACATCAGAGAGGAAGTTATCAAGAAGCATTTGATATGCTTGAAGAAAGATTTGAAGGTAATAAAGAGAAGGTGAAGAAATGGAGGATGGCTTTGACTGAAGCTGCAAACCTTTCTGGATGGCATTTTAGTAATGGatatgaatttaaatttatccAAAGCATAGTAGATGAGGTATCAAGAAAGTTGAATCGAATCCCTCTAAATGTCGCCACACACCCTGTTGGACTCCAAGCTCGCGTATCAGATGTTAACTCACTCTTAGAACTTGAATGTAATGATGTTAAAATGATAGGAATTTATGGTATTGGTGGAATTGGTAAAACAACCATTGCTAAAGCTGTATACAACTCAATATATCATCAATTTCGATATGCGAGTTTTCTTGCAAATGTCAGAGAAAATGCAAGTCATAGGGTTGGCTTAGTCAAACTCCAAGAGAGACTTCTTTTTGAGATACTTGGAGAGCAAGGAATGAAATTAGGCAGTGTTGATAAAGGAATCAACATAATAAAAGATAGGTTATGTAGAAAAAGAGTTCTACTTGTAATTGATAATGTGGATGACGTTGAACAACTTCAAGCATTAGTCGGCGGATTTGATTGGTTCGGTCCCGGAAGTAGGATCATCATAACTACAAGAGATAAACATTTGTTAACTGCTCATGAAATTGGTTTGACTTATGAGGTGAAGAAGTTAAATCAAATTGAGTCTCTTCAATTATTTAGCTGGAATGCATTTAAAAGAAGTGAACCTAAAGATACTTATTTAGATATTTCGAATCGCGCTGTTGGTTATGCAGAAGGTCTTCCATTAGCTTTAACTATTTTAGGTTCTGATTTGTGTGGTAGAAGTATTCATCAATGGGAATCTGCATTGGATAAATACAAGAGAACTCCTAATAGGAAAGTTCAGGATATACTTAGAATAAGTTTTGATGGTTTAGAggaaaatgaaaaggaaatttTTCTCTATATAGCATGTTTCTTTAAAGGGGAGATAATGGAATATACGTCAAAAGCGTTGCGCGCTTGCAATCTACATCCAGTTATCGGTATTGCAGTGCTTGTTGATAAGTCTCTCATAAACTTGGATGAAAGAGGTGTATTGTCAATGCACGATCTTATACAAGATATGGGAAAGGAAATTGTTCGGCAAGAATCACCGATGGATCCAGGAAAACGGAGCAGGTTGTGGTATTATGAAGATGTGCTTCAAGTACTGTCCGATGGAACAggAACTGACAAGATTCAAGGTATAATGCTGAGCCTACCTGAAAAGCAAGAGGTGCAACTAAAAGCTCAAGACCTCAAGAAGATGAGAAACCTTAGGATGTTGATAATTCGGAATGCTGAATTTTTCGGAGGCCATGTAAATCTACCAAATAGTTTAAGGCTGCTTGATTGGGAGGAATACCCTTCTTCATTTTTACCATCTGATTTCCTTCCCGAGAAAATTGTAATGCTAGAGTTGCGGCGCAGTCATATAACTTTGGACAAACCATTCAAGAACTATGCAAATATGACTTCTCTGAATCTTAGTTCATGTGAGTCCCTACTAAATATACCTGATGTTTCAGGGATACCGAACTTAGAGCAAATCATTCTAGAGGATTGTACAAGCTTAGTTGAGATTCATGAAACACTTGGTTCACTTGATAAACTAGTTTACTTAGGTGTTGAAAGGTGCACTGAGCTAAAGAAGTTACCAAGTGTCCTTAACTTGCCATCTTTATCATGCATTGTTCTCAATGGATGTTCTCAACTTGAGAATTTCCCACATTTACATGGAAAAATGGAAAATCTGAGAATCATCGAGGCAGAAGAGACGGCTATACATGAACTGCCTTCAAGTTTGGCTGATTTCAGCAACCTTATGGTGTTAGTACTAAAGTGTTGCACAAATCTGAAGGACTTTCCTAGAACCATTTCTTTGTTGCCAAATCTTCAGTTACTTGATATTTCTGGCTGTCCAAAACTTCAACTATTTCAAGAGTCCATTGAAAGTTCCTCAAATTTAGAATTACCACCAAAACCATGTCTAGATTTTGAATCTTCAAGCATCCAATCTTCACATGGTTTCCCTTTATTGGAAACACTTGATCTTAGTGACTGTAATCTATCAGATGAAGATCTACATATCCTTTGTTGCTTTTCCAACCTCACATCATTAGACATTTCAAGAAACCATTTTGTAACCCTACCTAAATGCTTCAACAAACTGAGTAGCTTGCAGGAGCTTTACATGGCCAATTGCAAGAATCTTCAACAATTTTCTGGGATTCCACCTAATCTAGAACATATAGATGCCACTAGTTGCACAATGTTGGATTCACAATCATTGAACCTATTATTAAGCCAGGCATTCCATAAGGAATTCAAATTTGAAGTTATAGCACCAAGGCCAAGATTACCAATGCCATTCAAGTTCAACTACCATAGCAAAGAAGGATCCATGTCATTCTTGATTGGCCAGAAATTTCCAAGAATTTCTCTATGCTTCATTTTTGAACTAGGAAATAAAAGAATTGGTTTTTTTGCATGTGAAGTCCAAATTTCTATTAATGGACAGAAAGCATCCAATAAAGAACAGTACTTCCTTTCAGTTTCTGGTGATCTTGTATGGCTTTATAATCAAGAAAATTTGATGGATTTAAATACATATTTATTGCATGAACAGAATCATGTGGAAGTTTCTTGTGAGATTGTAGATGCGAGTAAAGGCGCAGATGTGACAGTATCCTTTTGTGGAGTTCATGAGTATGAGGAAGATGAGGAAATGAAGAAACCAAATTTGATATTGATCACAAGTTCAAGTCCTTGTAATAATGAAAACTTGGATAACACTCAAATTTCTAAGGAACCACATGAAAATCAATGTCATTATGAAGATAACTTGGAAATTGATTGTTGTACCTTGCCTGAGAACTTAAAGCTTCATGAAATATCAGATGAACATATGCAACTTCTTTCGGCTTCAACTAGGGAAGAAATGTTTGAAGGTAATGGTAGTAAGGTTCAGAAGAATGGAAAAACTACAGATATTTTGTCAGCTGATACAATACTTGAAAGAAAGGAAATGTATTCATTGGATATGCAGCTATATGGTGATAGATTTTGGGATCCAATGCTATTAGAATGTCAGTTAAACTGcatgaatgagaaaaataaagAAAATATTTTGCTGAGTCATCAAGAATCGGAACCAAAAGAATCTTTAAGTGATGACAATATGGAAGCATTTTATTCTACTCTCAATGCTGAGAGATATGCTTCATTAGGAGATACAAGTGATGATTCAAAATTGGTTTATCCTAAGATGAATGAAGAAACCAAGAAAGCCTTGGAAATTGTGAAAGAACTCCTATCAAAACAAATTTGTTATCTTTTAGAACCAACATCATCCACATCAATGAAAACTACTTTGGAATATCTTTGTACTTTAATTGCAGATGATGATGTCTCAATGAGGTTAAAGTCTGTAATACTACAACTTTTAGCTGAATTTACTCAGTGGAGCTGTGACTACAATGCTGCAAACATGAAACTTGACTTCTCAACGACAATGCTATCAAAGCTTCAAAAACTTGAAGAGGGTGTAGTATCCAACAAGAACCAATTCAGTGAATTTGTGTCCATGGAAAGTGAGTTAACAAGCCAACTAGATTATTTGGGTGATAGAATGAAAGAGCTAGAAGAGCAAATTAAAGTCATTAAAGTGAACATTTCAATATCTCAAGTGGCTAGGGTCACTGCtcttagaaagaaaaaagaaaccttTGATGCAGGAAGAATGTTGAAAGCTGAAAGAGATGAGTTGAGGAAGCAAAGGCTGCGGTTGAGAGTGGAGCAAGAATCAGCTAAAGCTACCAAAGGATATATTGAGGATGAGTGGTCGAAGATTAGAGAGAAATTTGATAGAATCTTAAAAATGATTGGGTTAGATAATTATTGA 4299 0.3492 MASSSSSFNNGYVYHVFLSFRGEDTRETFTGHLYNALDQRGINTFIDDEGLRIGEEISQSLLKAIEESRISIIIFSKNYANSTWCLDELVKILECKKAKGQIVCSIFYNIIPSDVRHQRGSYQEAFDMLEERFEGNKEKVKKWRMALTEAANLSGWHFSNGYEFKFIQSIVDEVSRKLNRIPLNVATHPVGLQARVSDVNSLLELECNDVKMIGIYGIGGIGKTTIAKAVYNSIYHQFRYASFLANVRENASHRVGLVKLQERLLFEILGEQGMKLGSVDKGINIIKDRLCRKRVLLVIDNVDDVEQLQALVGGFDWFGPGSRIIITTRDKHLLTAHEIGLTYEVKKLNQIESLQLFSWNAFKRSEPKDTYLDISNRAVGYAEGLPLALTILGSDLCGRSIHQWESALDKYKRTPNRKVQDILRISFDGLEENEKEIFLYIACFFKGEIMEYTSKALRACNLHPVIGIAVLVDKSLINLDERGVLSMHDLIQDMGKEIVRQESPMDPGKRSRLWYYEDVLQVLSDGTGTDKIQGIMLSLPEKQEVQLKAQDLKKMRNLRMLIIRNAEFFGGHVNLPNSLRLLDWEEYPSSFLPSDFLPEKIVMLELRRSHITLDKPFKNYANMTSLNLSSCESLLNIPDVSGIPNLEQIILEDCTSLVEIHETLGSLDKLVYLGVERCTELKKLPSVLNLPSLSCIVLNGCSQLENFPHLHGKMENLRIIEAEETAIHELPSSLADFSNLMVLVLKCCTNLKDFPRTISLLPNLQLLDISGCPKLQLFQESIESSSNLELPPKPCLDFESSSIQSSHGFPLLETLDLSDCNLSDEDLHILCCFSNLTSLDISRNHFVTLPKCFNKLSSLQELYMANCKNLQQFSGIPPNLEHIDATSCTMLDSQSLNLLLSQAFHKEFKFEVIAPRPRLPMPFKFNYHSKEGSMSFLIGQKFPRISLCFIFELGNKRIGFFACEVQISINGQKASNKEQYFLSVSGDLVWLYNQENLMDLNTYLLHEQNHVEVSCEIVDASKGADVTVSFCGVHEYEEDEEMKKPNLILITSSSPCNNENLDNTQISKEPHENQCHYEDNLEIDCCTLPENLKLHEISDEHMQLLSASTREEMFEGNGSKVQKNGKTTDILSADTILERKEMYSLDMQLYGDRFWDPMLLECQLNCMNEKNKENILLSHQESEPKESLSDDNMEAFYSTLNAERYASLGDTSDDSKLVYPKMNEETKKALEIVKELLSKQICYLLEPTSSTSMKTTLEYLCTLIADDDVSMRLKSVILQLLAEFTQWSCDYNAANMKLDFSTTMLSKLQKLEEGVVSNKNQFSEFVSMESELTSQLDYLGDRMKELEEQIKVIKVNISISQVARVTALRKKKETFDAGRMLKAERDELRKQRLRLRVEQESAKATKGYIEDEWSKIREKFDRILKMIGLDNY 1432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03490 1432 PRINTS Disease resistance protein signature 289 303 - -
Tsu06g03490 1432 PRINTS Disease resistance protein signature 759 775 - -
Tsu06g03490 1432 PRINTS Disease resistance protein signature 382 396 - -
Tsu06g03490 1432 PRINTS Disease resistance protein signature 212 227 - -
Tsu06g03490 1432 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 973 IPR044974 GO:0006952
Tsu06g03490 1432 Gene3D Ribonuclease Inhibitor 536 710 IPR032675 -
Tsu06g03490 1432 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 156 IPR035897 -
Tsu06g03490 1432 SMART till_3 13 153 IPR000157 GO:0007165
Tsu06g03490 1432 Gene3D - 9 181 IPR035897 -
Tsu06g03490 1432 Coils Coil 1383 1405 - -
Tsu06g03490 1432 Gene3D - 182 341 IPR027417 -
Tsu06g03490 1432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 441 IPR027417 -
Tsu06g03490 1432 Pfam NB-ARC domain 202 416 IPR002182 GO:0043531
Tsu06g03490 1432 Pfam TIR domain 14 182 IPR000157 GO:0007165
Tsu06g03490 1432 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1053 1403 IPR044974 GO:0006952
Tsu06g03490 1432 Gene3D Ribonuclease Inhibitor 711 903 IPR032675 -
Tsu06g03490 1432 SUPERFAMILY L domain-like 487 901 - -
Tsu06g03490 1432 ProSiteProfiles TIR domain profile. 12 178 IPR000157 GO:0007165
Tsu06g03490 1432 Coils Coil 1329 1356 - -
Tsu06g03490 1432 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1053 1403 - -
Tsu06g03490 1432 Gene3D - 347 431 IPR042197 -
Tsu06g03490 1432 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 973 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03490 Tsu-Chr6 46050221 46058646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03490 8 781 WRKY Transcription Factor Family AT4G12020 31.738 1.73e-93 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03490 - - lja:Lj0g3v0340619.1 1758.04