Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03489 ATGAAAAGTTCTTCCTCTACTTCCTTCAACCACGGTTGGACATACGATGTGTTTGTGAGTTTCTACGGTGATGACACTCGTTACAGTTTCACAGGATACCTTTATAATAACTTGCGCGAAAAGGGAATCAACACTTTCAAAGATGACATCCAACTTAAGAAAGGGGAAGAGATTTCATCTGATCTTCTCCAAGCAATTGATGAGTCTAGGATTGCCATAATTGTTTTCTCTAAAAATTATGCATCCTCAACTTGGTGTCTTGATGAACTTGTCAGGATCATGGAGTGTAAGAAAGAAAAGGGACAATTGGTTCGTTTAGTTTTCTACCATGTTGATCCTTCAAATGTAAGGCATCAGAGGGAAAGTTTTGCAAGGTCAATGGCCAAGCATGAAGAAAATCTCGCAATTAGTAAAGAAAAAGTATTTAAATGGAGAAGGGCGCTCTCAAATGCAGCAAATTTATCAGGATGGCATTTCAAATCTGGGTATGaatatgaattaattaaaaagatcacTGAAGAAATATCTAGGAAATTAAATCTTACCCCTTTACACATAGCTGATCATCCAGTTGGATTGAATTACAAAATGTCACAAGTGACGTCACTTCTAGAAATCAAGTCTAATAATGAGGATGATTGCATGTTTGGAATCTGTGGAATTGGTGGTATTGGTAAAACAACACTAGCTAGAGCAGTATATAACTCAATATCTAGAGAGTTTGATAGGTCAAGTTTTCTTGTTGATGTACGAGAAAATTCAATGAAACATGGTCTAGTACATTTGCAAGAGACCCTTTTGCTTCATTTGCTAGATGAAAATATCAAGCTGGATGATGTGAGCAAAGGAATTCCTATAATAAAAAGACGGCTTCGCAACAAGAAAGTTCTTTTGATTCTCGATGATGttgataatcttcaacagttAAGATCATTGGTTGGAAGACATGATTGGTTTGGTTCTGGAAGTAGGATCATCATAACAACAAGAGATAAACATTTGTTAGCTGCTCATGGAGTTAAAAAATTGTATGAAGTGAAAGAGCTTAATGAGCATGAATCTCTTGAACTGTTTAGTATGAATGCTTTTAGAAAAAATGTGCCTGATGAAACTTATGTGGAGATAGCAAAAAGTGTAGTGAAATATGCAAAAGGTCATCCATTAGCTTTGAATGTAATAGGATCAGATTTATTTGGCAAAACAATTGAAGAATGGACAAGTGCATTGAATAAATATGAAACAATTCCAAGCAAAGAGATTCTGAATGTCCTTAAAGTAAGCTATGACAATTTGGATGataatgagaaagaaatttTCCTTGATATTGCTTGCTTCTTCAAAGGATATCCGACGGCAGATGTAGAAAAGACGCTAGATGCAAGTCGTTTTTATTCGAAATACGGAATTGGAGTACTTGTTGACAAATCTCTTGTAACAATTGGTGAATCCAATTCAGTAAAGATGCATGATCTTGTACAAGACTTGGGCAAAGACATTGCTCGAAAGGAGTCACCATTTGATCCGAGTAAACGCAGAAGATTATGGCATCCTGAGGATGTTGTTGAAGTCTTGACAGGAAACATGGGGACTGATACAATTGAAGGCATTATGTTGGACATGACTAACCTAAACCAAGAGGTTCATTTAAAAGCCAACACCTTCGATAATATGAGAAGGCTTAGAATCCTCATAGTTAGGAATGGACAAGTTTCTGGAGCACCTCAAAATCTTCCAAATAATTTGAGATTGCTTGAGTGGAACAAATATCCTTTAACATCTCTACCTGATAATTTTCATCCAAAGACACTTGTTGTACTCAATTTGCCAAAGAGTCATATAGCAATGGATGAGCCATTCAAGAAGTTTGAGCACTTGACTTTTATGAACTTCAGTGATTGTGGCTCCATAACAAAGCTACCTGATGTCTCTGGAACTCCAAATCTAACAAGAATTCTTGTTAATAATTGTCCAAACTTGGGAGAGATTCATGAATCTGTTGGAGATCTTGACAAACTAGTCACATTGAGTACTGAAGAATGCCCTAATCTCAAGAGTTTTCCACGAGGCCTTAGATCAAAATATCTTGAATACCTTAATCTTAGGAAGTGTTCTAATATTGAAAGTTTCCCAGATGTATTGGCAAAAGtggaaaatatgaaaaatattgacatAGGAGGgacatccataaaaaaatttccaaattcAATTGAAAACCTCAAAGGCGTTGAAGAATTAGTATTAACATCATGCACAAATGTTGAGGATCTACCTAGTAACTcatatatgtttcaaaatattgaAGAGCTTAATGTGGAAGGATGTCCACAACTTCCAAAACTTCTGTGGAAGTCATTGGAAAACAGGACTACTAATGATTGGTTTCCAAAGTTAAGTAATCTGAGTCTGAAAAGTTGTAATCTATTAGATGAAGATCTTGATTTAATTCTCAAATGTTTTCTACAATTAAAGTGGTTGATTCTATCAGATAACAATTTCTTGACCATTCCTGATTGCATTGAAGACCTTTCTCATCTCTTGCTTCTTAACATAGACAATTGTAAGAATCTTAGAGATATTTCAGTGCTTCCACCATATTTGCAATATATAAATGCAAGGAAGTGTATGGCACTGACTCTTCAATCATCAGAAGTACTATTGAGCCAGGCATTTCAGGAGGTTGAGTACATAGACATAGTTGTTCCAAGGACAAAAGTTCCATCTTGGTTTGACCATTGTAATAAAGGGGAGTCTATTACTTTTTGGATTCGTAAAAGTTTCCCTGCAATtgctctgttttttcttttaagtgGCGATGATGAAAAGAAAACCAATTGCACATGTGAATTCTGCATACTAATCAATGGAATACAAGTATTCCAAGGAAGTAGTGAGTGGCCAGTTGATCATGTATGGCTATTTGATCTGCGAATTCACCTCACCGCGAGCAAGTGGCAAGTCTtcaatgaacaaataaaatctGGTTGGAATCAGGTGGAGATTTCATGTTCAGTCATCGATGAGTCAAAAACTGTAACTGTTAAATGTTGTGGAATTCATCTTTACAAAGATAGAATGAATATCCACCATGTCTCATTCATAAGCCCTGATCTTCGAGGCTCAAATATGGTTCATGATAATGATAGTTTGGATATCTATGATGAAGAAAGAGAAGATGTTGTTTTTCCTACAATATTTGCTAAATATTTTAACAAGACTATATTAGAGGTCATGAGTGATCTTAAATCCAGCAAGAGAAAAGTTGATAATGAATATGACTATGATGAGGAGTTGGAACTGGACTGTGACATTGACATTGACAACCAGTACATGGAAGAGGAACAACATTCACCTTCCCTTAATCATCAAATCCTAGAAATTTTGAACTCGTGGATAAAGACCAAGGAAAAGATGCTAATTCCAGATTCAAGTACCATTGCATCAACAAGTAGAGACAAGGGAACACAATTAGTTGATAAAATCACTTCTGTTGAACAAATCAATGTTGATTCAATAAAAAGCAAACAACTTATCCTAAATGCAGAAGCCTGCATAAACAATTACGAGTCTACCATAAATGAAGACAATATGGAAGCATTTTATGGTTCACTTGAAGCAGAAACAACTTCTCCTTTACACGTCCAAGACAACCTACCCAATAATGAAACTGCGAGAATTAGGCCTAGTGAAGAAACACAGAAAGCATTGCAAATTCTGCAAGACTTTGTCTCAAAAAAGTTCTCTCTTTTGTTACATCCGGGACGTTCGGGATTGCTGAAAGATATTCTAAAGTATCTCATCAGTTTAACACCAAATGAAGGATTGTCTCTGAAAACAAAATCAGTTCTATTTCAACTTTCACATAGTTTTGCTCAGTGGAGTTTGGATTACAACAATGCAAACCTTAAACTGGAGTCAGCAACTACAGATATATCAAAAGCTGAGAAAATGAAGGTTTGTCTTGAAAATAACGTGAAAGACTTCCGAGAAATGGACATGGTGGAGAAGTGTTTGTCTAATCAGTTGGCCTGCTTGCAGGAAGAGAAGAGAGTACTTGAAGTGAAAATCAATGCTATTAAAGCTGAGATTGAAGATTTCACAGAACAAAGAGAAATGGTTGCTAAGAGAAAGACAGAATTGTTTCAAAAAGGAAGCGTGATGAAAGCAGAAAGGGATGATTTGAGGAACCAAGTTCCAAGGTTGAAAGCTGAGAAGGAGTTGGCAAAGATAACACAAGCTAATATCGAAGAAGAGTGGTCAAAACTTGGAGAACAATTCATTGGAAGCACCCATTTTGAAGAGTGGACCTTAGAACCATGA 4317 0.3498 MKSSSSTSFNHGWTYDVFVSFYGDDTRYSFTGYLYNNLREKGINTFKDDIQLKKGEEISSDLLQAIDESRIAIIVFSKNYASSTWCLDELVRIMECKKEKGQLVRLVFYHVDPSNVRHQRESFARSMAKHEENLAISKEKVFKWRRALSNAANLSGWHFKSGYEYELIKKITEEISRKLNLTPLHIADHPVGLNYKMSQVTSLLEIKSNNEDDCMFGICGIGGIGKTTLARAVYNSISREFDRSSFLVDVRENSMKHGLVHLQETLLLHLLDENIKLDDVSKGIPIIKRRLRNKKVLLILDDVDNLQQLRSLVGRHDWFGSGSRIIITTRDKHLLAAHGVKKLYEVKELNEHESLELFSMNAFRKNVPDETYVEIAKSVVKYAKGHPLALNVIGSDLFGKTIEEWTSALNKYETIPSKEILNVLKVSYDNLDDNEKEIFLDIACFFKGYPTADVEKTLDASRFYSKYGIGVLVDKSLVTIGESNSVKMHDLVQDLGKDIARKESPFDPSKRRRLWHPEDVVEVLTGNMGTDTIEGIMLDMTNLNQEVHLKANTFDNMRRLRILIVRNGQVSGAPQNLPNNLRLLEWNKYPLTSLPDNFHPKTLVVLNLPKSHIAMDEPFKKFEHLTFMNFSDCGSITKLPDVSGTPNLTRILVNNCPNLGEIHESVGDLDKLVTLSTEECPNLKSFPRGLRSKYLEYLNLRKCSNIESFPDVLAKVENMKNIDIGGTSIKKFPNSIENLKGVEELVLTSCTNVEDLPSNSYMFQNIEELNVEGCPQLPKLLWKSLENRTTNDWFPKLSNLSLKSCNLLDEDLDLILKCFLQLKWLILSDNNFLTIPDCIEDLSHLLLLNIDNCKNLRDISVLPPYLQYINARKCMALTLQSSEVLLSQAFQEVEYIDIVVPRTKVPSWFDHCNKGESITFWIRKSFPAIALFFLLSGDDEKKTNCTCEFCILINGIQVFQGSSEWPVDHVWLFDLRIHLTASKWQVFNEQIKSGWNQVEISCSVIDESKTVTVKCCGIHLYKDRMNIHHVSFISPDLRGSNMVHDNDSLDIYDEEREDVVFPTIFAKYFNKTILEVMSDLKSSKRKVDNEYDYDEELELDCDIDIDNQYMEEEQHSPSLNHQILEILNSWIKTKEKMLIPDSSTIASTSRDKGTQLVDKITSVEQINVDSIKSKQLILNAEACINNYESTINEDNMEAFYGSLEAETTSPLHVQDNLPNNETARIRPSEETQKALQILQDFVSKKFSLLLHPGRSGLLKDILKYLISLTPNEGLSLKTKSVLFQLSHSFAQWSLDYNNANLKLESATTDISKAEKMKVCLENNVKDFREMDMVEKCLSNQLACLQEEKRVLEVKINAIKAEIEDFTEQREMVAKRKTELFQKGSVMKAERDDLRNQVPRLKAEKELAKITQANIEEEWSKLGEQFIGSTHFEEWTLEP 1438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03489 1438 Coils Coil 1334 1375 - -
Tsu06g03489 1438 Gene3D - 348 432 IPR042197 -
Tsu06g03489 1438 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 825 1251 IPR044974 GO:0006952
Tsu06g03489 1438 SMART AAA_5 212 349 IPR003593 -
Tsu06g03489 1438 Gene3D Ribonuclease Inhibitor 536 691 IPR032675 -
Tsu06g03489 1438 Gene3D Ribonuclease Inhibitor 785 924 IPR032675 -
Tsu06g03489 1438 SMART till_3 14 154 IPR000157 GO:0007165
Tsu06g03489 1438 Gene3D - 9 183 IPR035897 -
Tsu06g03489 1438 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 825 1251 - -
Tsu06g03489 1438 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 9 700 - -
Tsu06g03489 1438 Pfam TIR domain 15 185 IPR000157 GO:0007165
Tsu06g03489 1438 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 157 IPR035897 -
Tsu06g03489 1438 SUPERFAMILY L domain-like 544 883 - -
Tsu06g03489 1438 PRINTS Disease resistance protein signature 215 230 - -
Tsu06g03489 1438 PRINTS Disease resistance protein signature 383 397 - -
Tsu06g03489 1438 PRINTS Disease resistance protein signature 290 304 - -
Tsu06g03489 1438 PRINTS Disease resistance protein signature 840 856 - -
Tsu06g03489 1438 Gene3D Ribonuclease Inhibitor 692 784 IPR032675 -
Tsu06g03489 1438 ProSiteProfiles TIR domain profile. 13 179 IPR000157 GO:0007165
Tsu06g03489 1438 Coils Coil 1296 1330 - -
Tsu06g03489 1438 Gene3D - 184 344 IPR027417 -
Tsu06g03489 1438 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 700 IPR044974 GO:0006952
Tsu06g03489 1438 SUPERFAMILY "Winged helix" DNA-binding domain 418 524 IPR036390 -
Tsu06g03489 1438 Coils Coil 1390 1410 - -
Tsu06g03489 1438 Pfam NB-ARC domain 197 427 IPR002182 GO:0043531
Tsu06g03489 1438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 442 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03489 Tsu-Chr6 46042977 46049846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03489 1 780 WRKY Transcription Factor Family AT4G12020 31.009 3.26e-92 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03489 - - lja:Lj2g3v0582820.1 2041.93