Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03484 ATGGACAGCCTTTCAAATTCAAAGAATAATGTTGAGTGTGAGAGTAAGAGCATAGAGAATAGAGAAGAGCAAGAAGCtatagaagatgaagaagaaagcTTCTCATATGCTATACAGCTTGCAATCTCTATTGCACTTCCCATGGCACTTCAATCTGCAATTGAGCTTGGTGTATTTGAAGTGTTGCAAAATGCTGGTGAAGGTGCTCGACTCTCTGCCGATGAAATTGTTTCGCGTCTTTCGAAAATTAACAATCCAGAAGCTTCTAAAATGCTAGACCGCATTCTTGCACTTCTTGCTTCTCACTCGGTACTTAAATGTTTTATTGCGACTAATTCCTTTCAGAGACACTACAGCATGACTCTTGTTGCCAAATATTTTGCTCCTAATTCTGATGGGGTTTCATTAGGACCCTTGATTGCCTTGAATAATGATAAGATCGTATTATCTAGCTGGTCCCAACTTAAAGATGCAATTCAGGAAGGAGGTACTCCATTCAACAGGTTTCATGGCAgccatttctttgatcttcccAGTTTAGACTCGAGGTTTAATCAAGTTTTAAATCAAGCAATGGACAATCATACAACTATAGTCATGAAGAAGGTTCTTCTTGAATGCTACAAAAGTTTTAAAGACATAAAAAGTCTTGTGGATGTTGGTGGTGGCCTTGGAATAAACATTAACATGATCACTTCAAAATACACTCACATTCGGGGAATCAATTTCGACTTACCTCATGTCATACAACATGCTCTTTACTCTCCTGGAGTGGAGCATATTGGCGGAGATATGTTTGAAAGCGTGCCCAATGGTGATGCCATTTTTATGAAGTGGATCCTTCACGATTGGAGTGATGAAAGTTGCTTGAAACTTCTCAAGAATTGTTATGATGCTATTCCTGATGATGGGAAGGTGATTGTTTTGGAGGCACTTCTGCCTATTATGCCTAAGAATGAAGTGGCTTGGAAATCTATCTCCCAAATGGATATTCTCATGATGACTCATTGTCGAGAAGGAAGAGAGCGAACTGAGCAAGAATTCATGGATTTGGCAACTAAAGCTGGATTTCGTGGCATCAAATATGAATGTTGTATCTATAATTTTTGGCTTATGGAGTTCTTCAACGGAGAATGGACCGAGGTGAGACGGCGACGTCGGAAATCGCTTCGACAGGAGGATGGAGCACATGACAGACAAAGGCAGTCACGAGGTTTTCACTATAGACTGAGATCGATTTCCAATTCCAGATATCCTTACGAGAACGACGACCAAGTCTGGAACGAGAACAGAGCGCTCGATCACTTCAATCATGGAAGGAACCGGTCGCGTTGTAGCACAGTCCAGCGTGAGTTTCGTCAACAAGGACAAGTGCAGTTTCACGCGCGTTCATCTTCAGGGTTTCGGCTTTCTCGACGGCGTTCGTTGTCGGCGCAAGGGCGGAGACAGCAGGATTATTACGACGGACGACGGGTATCAGAGTTTAGGGAGGATCATAGGAAAGTGTTTAATGGATGCAGTAACGTTGGTAGAAGGGAGGAGAAGAATTACGTGTATGGCCATGGCAAGGAGAAAGGTGAGCATGGTAATGGTAAAATCTTAGATGCTGATCAACGGTATGTTTCTTTCTATTTCACGAATTTTCCGCCgcaaatttcgattttttatcTTAGGAAAGGGTTTGAAGTCTGTGGTATATTGGAGGATGTTTTTGTAGCTAGGAAAAGGAATAGGTTAGGTGAATCCTATGGTTTTGTAAAATTCTCTAATGTTAGGGACATAGCTAAAACGACGAAGGCTTTGAACGCCGTCTGGTTCGGTCATTACCGTGTCATTGCTAGCGTTGCAAATTTCGAACGCAATGACCCTGGTGCGAATAGGAGACCAGAGAAGGAGAAAGCTGGAAAATCGAAGAGAACCGAAGATGCGTTAACTAAGGATGGCACCCAAATGCCTAACAAGCAAGCTATGCAAGCAGGTGGTGAAGTTCGAACTAAGTCAGCGGGGTCAAAGCTGCAGAATGGAGGAATCATTGTTTCGGAGCTTGGACCGGGTATTCTGGACAGTGTGAGGGTGGGCGATATAGTAGTAAAGCTTGGGCCACGTCAGGAGCAGGTTTCTAGCATAGACGGTCAGAAAAAGGGGGAAGGGCAATCATCCAATGGGACGAATATGCATACTGACATTGTTAAGGAACAAGATACTAGGGTTCTCTTACGCAATTATCAAACAATGAAAGATGATGTGCAGTGGGCTCGTAATGGAGTTGTAGCGACGGTCATCAACGGCGAGGCAATTCCGGTGGTGCAAAGTAGAATCATTGACGTCGGTTTTAATGATTTGGTTATCATTCCTATTGGGGCAAACAAGGTTTTCGTTAGAAGCATGGCAGGGGTTGACGCAATGACAACTGTCAGTAATGCCAAAGAattcttcaaattgattttctcGAATTGGATGCGTTGGGAAAAGGATGCGTTGCCTTATCGTAGGGGCGCGTGGGTCCGTTTGTACGGTGTCCCGCTGCACGCATGGAATGTAAACTTTTTTAAGCTGTGTGTCTTTGATTGCGGTAGGTTTTTACGCGCGGATAGTTGTTCCGTTGATAAGGACAGGCTTGACTTTGCTCGGGTTCTGATTGCCACGCCTGATCTTTAA 2658 0.4248 MDSLSNSKNNVECESKSIENREEQEAIEDEEESFSYAIQLAISIALPMALQSAIELGVFEVLQNAGEGARLSADEIVSRLSKINNPEASKMLDRILALLASHSVLKCFIATNSFQRHYSMTLVAKYFAPNSDGVSLGPLIALNNDKIVLSSWSQLKDAIQEGGTPFNRFHGSHFFDLPSLDSRFNQVLNQAMDNHTTIVMKKVLLECYKSFKDIKSLVDVGGGLGININMITSKYTHIRGINFDLPHVIQHALYSPGVEHIGGDMFESVPNGDAIFMKWILHDWSDESCLKLLKNCYDAIPDDGKVIVLEALLPIMPKNEVAWKSISQMDILMMTHCREGRERTEQEFMDLATKAGFRGIKYECCIYNFWLMEFFNGEWTEVRRRRRKSLRQEDGAHDRQRQSRGFHYRLRSISNSRYPYENDDQVWNENRALDHFNHGRNRSRCSTVQREFRQQGQVQFHARSSSGFRLSRRRSLSAQGRRQQDYYDGRRVSEFREDHRKVFNGCSNVGRREEKNYVYGHGKEKGEHGNGKILDADQRYVSFYFTNFPPQISIFYLRKGFEVCGILEDVFVARKRNRLGESYGFVKFSNVRDIAKTTKALNAVWFGHYRVIASVANFERNDPGANRRPEKEKAGKSKRTEDALTKDGTQMPNKQAMQAGGEVRTKSAGSKLQNGGIIVSELGPGILDSVRVGDIVVKLGPRQEQVSSIDGQKKGEGQSSNGTNMHTDIVKEQDTRVLLRNYQTMKDDVQWARNGVVATVINGEAIPVVQSRIIDVGFNDLVIIPIGANKVFVRSMAGVDAMTTVSNAKEFFKLIFSNWMRWEKDALPYRRGAWVRLYGVPLHAWNVNFFKLCVFDCGRFLRADSCSVDKDRLDFARVLIATPDL 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03484 885 Gene3D - 14 127 IPR036388 -
Tsu06g03484 885 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 38 376 IPR016461 GO:0008168
Tsu06g03484 885 SMART rrm1_1 542 614 IPR000504 GO:0003723
Tsu06g03484 885 Gene3D Vaccinia Virus protein VP39 129 376 IPR029063 -
Tsu06g03484 885 Pfam Dimerisation domain 48 100 IPR012967 GO:0046983
Tsu06g03484 885 Pfam O-methyltransferase domain 152 358 IPR001077 GO:0008171
Tsu06g03484 885 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 374 IPR029063 -
Tsu06g03484 885 SUPERFAMILY "Winged helix" DNA-binding domain 29 130 IPR036390 -
Tsu06g03484 885 MobiDBLite consensus disorder prediction 706 725 - -
Tsu06g03484 885 MobiDBLite consensus disorder prediction 620 670 - -
Tsu06g03484 885 Gene3D - 535 650 IPR012677 -
Tsu06g03484 885 CDD RRM_SF 544 614 - -
Tsu06g03484 885 PANTHER O-METHYLTRANSFERASE 23 375 IPR016461 GO:0008168
Tsu06g03484 885 MobiDBLite consensus disorder prediction 1 26 - -
Tsu06g03484 885 MobiDBLite consensus disorder prediction 623 645 - -
Tsu06g03484 885 SUPERFAMILY RNA-binding domain, RBD 538 621 IPR035979 GO:0003676
Tsu06g03484 885 Coils Coil 1 33 - -
Tsu06g03484 885 Pfam Domain of unknown function (DUF4283) 786 880 IPR025558 -
Tsu06g03484 885 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 23 375 - -
Tsu06g03484 885 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 541 618 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03484 Tsu-Chr6 45977758 45983781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03484 30 375 Monolignol Biosynthesis Gene Families AT5G54160 50.430 2.66e-118 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03484 K13066 - gmx:100803633 486.878