Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03480 ATGTATGAGCATGAATTTATTGGAAAGATTGTTGAAGAAGTCTTAAAAAAGATAACACTTGGTATTACCTTACATGCTGGTGATTACCAAGTTGGGCTGAAGCCTAAATTACAACGTGTGATTTCGCTTTTGAATGTTGGGTCTGATGATACAGTCCACATGGTAGGGATCTATGGGATTGGTGGAATAGGGAAAACCACTCTTGCTTTAGAAGTTTATAATTCGATTGTCCATCAATTTCAATGTTCCTGTTTTCTTAAAGTCAGagaaaattataacaaaaatggGTTGGTACTCCAACAGATGCTTCTGTCTAAAATTGTTGAAAAGAACATTGACATAAACAGTGTTGAAGAAGGAATTTCAATATTACAAAAAATGCTTAGCAAAAAGAAAGTTCTTTTGCTTCTAGACGATGTTGACAATGAGAAGCAATTACAGGCTATTGCTGGAAAACCTAATTGGTTTGGTCTTGGCAGTAGAATCATCATCACAACTCGGGACCGAAGGTTGCTAACATTGCATGGGGTCGAAGATGAACATAAATATGAGTTGAAGGAATTGAATGACAAAGATGCTTTTGAATTGGTTAAACGGAATgcttttaaaaatgaaaagactGACAGAGTTAATACAGATTATGTGCATGTTTTAGAACGTGCCGTAGCATATGCTTCAGGTCTTCCACTTGCTTTGGAAGTCATAGGCTCTCACTTTTCTAATAGGAAAGTAGAGGAATGTGAATGTGCCCTAGATCAATGTGAAAGGGTTCCTGATAAAAGGATCCAAATGACACTACAATTGAGCTTTGATGCTTTGGAGGAAGAAGAGAAGTCTGTTTTTCTTGACATTGCATGTTGCTTCAAAGGATGGTCATTGACAAGGGTAGAACAAATACTTCATGCTCATCATAGTTATAGcattaaaaaacatattattgTGTTAGTGGAAAAATCtctcataaaaataaatgagtatGGTGATGTGACATTACATGATTTGATAGAGGATATGGGGAAAGATATTGTTAGACAAGAATCACCGAATCCTGGGGAACGCAGTAGGTTATGGGCCTCTAAAGATATATATCAAGTTTTAAAAGACAATAAGGTTAGTTATAATGATATGGATGGTTTGGTTTTTCATCTTTAA 1152 0.3403 MYEHEFIGKIVEEVLKKITLGITLHAGDYQVGLKPKLQRVISLLNVGSDDTVHMVGIYGIGGIGKTTLALEVYNSIVHQFQCSCFLKVRENYNKNGLVLQQMLLSKIVEKNIDINSVEEGISILQKMLSKKKVLLLLDDVDNEKQLQAIAGKPNWFGLGSRIIITTRDRRLLTLHGVEDEHKYELKELNDKDAFELVKRNAFKNEKTDRVNTDYVHVLERAVAYASGLPLALEVIGSHFSNRKVEECECALDQCERVPDKRIQMTLQLSFDALEEEEKSVFLDIACCFKGWSLTRVEQILHAHHSYSIKKHIIVLVEKSLIKINEYGDVTLHDLIEDMGKDIVRQESPNPGERSRLWASKDIYQVLKDNKVSYNDMDGLVFHL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03480 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 284 IPR027417 -
Tsu06g03480 383 Gene3D - 187 274 IPR042197 -
Tsu06g03480 383 Gene3D - 18 178 IPR027417 -
Tsu06g03480 383 Pfam NB-ARC domain 37 249 IPR002182 GO:0043531
Tsu06g03480 383 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 369 IPR044974 GO:0006952
Tsu06g03480 383 SUPERFAMILY "Winged helix" DNA-binding domain 261 367 IPR036390 -
Tsu06g03480 383 PANTHER ARCHAEAL ATPASE 2 369 - -
Tsu06g03480 383 PRINTS Disease resistance protein signature 54 69 - -
Tsu06g03480 383 PRINTS Disease resistance protein signature 127 141 - -
Tsu06g03480 383 PRINTS Disease resistance protein signature 225 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03480 Tsu-Chr6 45914819 45915970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03480 30 381 WRKY Transcription Factor Family AT5G45050 32.402 2.46e-44 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03480 - - mtr:MTR_6g079140 459.529