Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03479 ATGGCTAAACATATGGCCAACTCCAACCCAAACATAGATAAATGGAAGGAGTCTCTTGAGCAAGTTGCAAGTTTGTGTGGCTCACATTACAAGAAGGACATGTATGAGCATGAGTTTATTGGAAAGATTGTTGAAGAAGTCTTAAAAAAGATAACACTTGGTATTACCTTACATGTTGGTGATTACCTAGTTGGGCTGAAGCCTAAAATACAACGTGTGATTTCACTTTTGAATGTTGGGTCTGATGATACAGTCCACATGGTAGGGATCTATGGGATTGGTGGAATAGGGAAAACCACTCTTGCTTTAGAAGTTTATAATTCGATTGTCCATCAATTTCAATGTTCCTGTTTTCTTAAAGTCAGagaaaattataacaaaaatggGTTGGTACTCCAAAAGATGCTTCTGTCTAAAATTGTTGAAAAGAACATTGACATAAACAGTGTTGAAGAAGGAATTTCAATATTACAAAAAATGCTTAGCAAAAAGAAAGTTCTTTTGCTTCTAGACGATGTTGACAATGAGAAGCAATTACAGGCTATTGCTGGAAAACCTAATTGGTTTGGTCTTGGCAGTAGAGTCATCATCACAACTCGGGACCAAAGGTTGCTAACATTGCATGGGGTTGAAGCTGAACATAAATATGAGTTGAAGGAATTCAATGAAAAAGATGCTTTTGAGTTGGTTAAACGGAATgcttttaaaaatgaaaagaagacTGACAAAGTTAATACAGATTATGTGCATGTTTTAAAACGTGCCGTAGCATATGCTTCAGGTCTTCCACTTGCTTTGGAAGTCATAGGTTCTCACTTTTCTAATAGGACAGTAGAGGAATGTGAATGTGCACTAGATCAATGTGAAAGGGTTCCTGATAAAAGGATCCAAATGACACTACAATTGAGCTTTGATGCTTTGGAGGAAGAAGAGAAGTCTGTTTTTCTTGACATTGCATGTTGCTTCAAAGGATGGTCATTGAGAAGGGTAGAACAAATACTTCATGCTCATCATAGTTATAGcattaaaaaacatattattgTGTTAGTGGAAAAATCtctcataaaaataaatgagtatGGTTATGTGACATTACATGATTTGATAGAGGATATGGGGAAAGATATTGTTAGACAAGAATCACCAAATCCTGGGGAACGCAGTAGGTTATGGGCCTCTAAAGATATATATCAAGTTTTAAAAGACAATAAGGTTAGTTATAATGATATGGATGGTTTGGTTTTTCATCTTTAA 1254 0.3405 MAKHMANSNPNIDKWKESLEQVASLCGSHYKKDMYEHEFIGKIVEEVLKKITLGITLHVGDYLVGLKPKIQRVISLLNVGSDDTVHMVGIYGIGGIGKTTLALEVYNSIVHQFQCSCFLKVRENYNKNGLVLQKMLLSKIVEKNIDINSVEEGISILQKMLSKKKVLLLLDDVDNEKQLQAIAGKPNWFGLGSRVIITTRDQRLLTLHGVEAEHKYELKEFNEKDAFELVKRNAFKNEKKTDKVNTDYVHVLKRAVAYASGLPLALEVIGSHFSNRTVEECECALDQCERVPDKRIQMTLQLSFDALEEEEKSVFLDIACCFKGWSLRRVEQILHAHHSYSIKKHIIVLVEKSLIKINEYGYVTLHDLIEDMGKDIVRQESPNPGERSRLWASKDIYQVLKDNKVSYNDMDGLVFHL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03479 417 PANTHER ARCHAEAL ATPASE 1 403 - -
Tsu06g03479 417 PRINTS Disease resistance protein signature 160 174 - -
Tsu06g03479 417 PRINTS Disease resistance protein signature 87 102 - -
Tsu06g03479 417 PRINTS Disease resistance protein signature 259 273 - -
Tsu06g03479 417 Gene3D - 1 55 IPR035897 -
Tsu06g03479 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 318 IPR027417 -
Tsu06g03479 417 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 403 IPR044974 GO:0006952
Tsu06g03479 417 SUPERFAMILY "Winged helix" DNA-binding domain 295 401 IPR036390 -
Tsu06g03479 417 Pfam NB-ARC domain 69 296 IPR002182 GO:0043531
Tsu06g03479 417 Gene3D - 221 308 IPR042197 -
Tsu06g03479 417 Gene3D - 57 210 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03479 Tsu-Chr6 45874623 45877446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03479 64 415 WRKY Transcription Factor Family AT5G45050 31.755 1.42e-42 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03479 - - mtr:MTR_6g079140 506.523