Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03478 ATGGAAAATCTCAAAACACTGCTTATTTATGGTTGGGATCATTTTGATGGAAGTTTCACACATCTTCCAAATAGTCTGAGAGTACTGCATTGGCATTCATCATTTCGATCTGACCTCCCTAAAAGTAATCTTAAAAGTGTTTCACCACTCGATTGCCCTTCCTGGGTAGAACTGGATCTTTCAGATTGTTCAAGTCTAGAAAGTTTTCCTCTCACGGTGGGTGGATTTGATGGAAATCTTAAAATCATGAGGCTTACATATTGcaacaaaatcagaatttttcCACTTCACATGTTACATTATCTAGAAGAACTCAATCTTAGATATTGTGATAGTCTCGAGAGTTTTTCACATGTGGTAGATGGTTTGGGGGATAAACTTAAAATCATGAATTTTAGAGGTTGCACCAATCTAAAGACTATTCCACCTCTTAACTTGGCTTCTCTCGAAGAACTCGATCTTTCATACTGTACTAGTCTTGAGAGTTTTCCACATGTGGTGGACGGATTTCTCGGAAAACTTAAAATCCTGCGTGTTACAAAGTGTCACAATCTAAAGACTATTCCACCTCTCAACTTGGCTTCTCTCGAAGAACTCAATCTTTCAATTGTACTAGTCTTGAGAGTTTTCCACATGTGTGTTGAGAGTTTTCCACGTGTGGTTCTTGGAAAACTTAAAACCCTTCTTGCTATAAATTGTCACAATCTTAGAAGTATCCCAACTCTTAAGTTGGATTCTTTAGAAGAACTTGACATTTCACATTGTTATATCCTCGAGAGTTTTCCAAGCGATGGGTTTTTGGATAAGCTTAAATTCTTGAATATTGAACAGTGCATCATGCTTAGGAGTCTCCCACCACTCAAGTTGACTTTGTTGGAACGGTTCAATCTTTCATATTGTCCAAATCTAGAGAGTTTTCCAAAAATATTGGGAGAGATGAGAAATATACCACGACTTCTATTGGATGGAACTACCATAAAAGAATTGCCGTTTCCATTTCAAAATGTTACTCATCCTGAAACATTTTGTGGACGTAAATGTGGAATTGTTCGTTTACGTAAAAGAGATGTTGTGATGTCAATAATGGCCGAACTTTTCATCAACAATAGAAAAAATGTGAGCTCAATGATATTTTCACATGTACAATATATTTGTCGCGAGAACCGCAAAGTTTCACTTGAATTTCTGTCAGATAGACTCTTGTTTGCTAATGTGAAAGAATTACACCTCACTAATATTCGATTCACGGTTCTTCCTGAATCTATCAAGGAATGTAAGTTTCTATGGAGGCTGGTTTTGGACAATTGTAAGGAACTTCGGGAAATTCAAGAGATTCCTCCATGCTTAACAATGTTATCTGCACTAAACTGCAAATCGTTGACTTCTTCAAGCAAAAGCAAAAACTGCATGAGGCTGGAAATACTTGGTTCCTTTTACCACGAGCAAAGATTCCAGAGTGGTTCGATCACCAATGCTTGGCAGGATTGTCAATTTCATTTTGGTTTCGTAACAAGTTTCCTGCCATAA 1527 0.3687 MENLKTLLIYGWDHFDGSFTHLPNSLRVLHWHSSFRSDLPKSNLKSVSPLDCPSWVELDLSDCSSLESFPLTVGGFDGNLKIMRLTYCNKIRIFPLHMLHYLEELNLRYCDSLESFSHVVDGLGDKLKIMNFRGCTNLKTIPPLNLASLEELDLSYCTSLESFPHVVDGFLGKLKILRVTKCHNLKTIPPLNLASLEELNLSIVLVLRVFHMCVESFPRVVLGKLKTLLAINCHNLRSIPTLKLDSLEELDISHCYILESFPSDGFLDKLKFLNIEQCIMLRSLPPLKLTLLERFNLSYCPNLESFPKILGEMRNIPRLLLDGTTIKELPFPFQNVTHPETFCGRKCGIVRLRKRDVVMSIMAELFINNRKNVSSMIFSHVQYICRENRKVSLEFLSDRLLFANVKELHLTNIRFTVLPESIKECKFLWRLVLDNCKELREIQEIPPCLTMLSALNCKSLTSSSKSKNCMRLEILGSFYHEQRFQSGSITNAWQDCQFHFGFVTSFLP 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03478 508 PANTHER ARCHAEAL ATPASE 181 473 - -
Tsu06g03478 508 SUPERFAMILY L domain-like 49 443 - -
Tsu06g03478 508 Gene3D Ribonuclease Inhibitor 1 125 IPR032675 -
Tsu06g03478 508 Gene3D Ribonuclease Inhibitor 174 316 IPR032675 -
Tsu06g03478 508 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 181 473 IPR044974 GO:0006952
Tsu06g03478 508 Gene3D - 128 173 - -
Tsu06g03478 508 Gene3D Ribonuclease Inhibitor 362 484 IPR032675 -
Tsu06g03478 508 Pfam Leucine Rich Repeat 246 266 IPR001611 GO:0005515
Tsu06g03478 508 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 220 IPR044974 GO:0006952
Tsu06g03478 508 PANTHER ARCHAEAL ATPASE 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03478 Tsu-Chr6 45870838 45873828 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03478 171 330 WRKY Transcription Factor Family AT4G12020 31.892 9.13e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03478 - - mtr:MTR_3g006280 450.284