Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03476 ATGGCTTCAACCACCAATGATTTTGCTTACGAAGTGTTCCTTAGCTTCAGAGGCGAGGATACTCGCTATGGTTTCACCGGCACTCTCAAGAATTCTCTTGATGACAAAGGAGTCCGTACTTTTTTCGATGACGAGGAGCTTAGAAAAGGGGATGAAATCACACCATCACTTTTCAAGGCAATTGAAGACTCCAAAATCGCCATTGTTGTCCTCTCTGAGAATTATGCTTCTTCCTCTTTTTGTTTACAAGAACTTACTAAGATCCTTGATTCCATGAAAGATAAGGGTCGTTCTGTTTTGCCAGTTTTTTATAAAGTGGATCCTTCTGATATAAGAAAGTTACAAAACACTTATGGAAAAGCAATGGCTAAACACAAGGCCAGCTCCAATCCCAACATAGATAAATGGAAGGTGTCTCTTGACCAAGTTGCTAATTTGTCCGGCTTCCATTACAAGGAAGGGGAGGTGTATGAGCATAAGTTTATTGGGACGATTGTTGAAGAGGTCTTAAGAAAGATAAAACTTGTTGCCTTACCTGTTGGTGATTACTTAGTTGGATTGGAGCCCCAAAAGGAACATGTGACCTCGCTTTTGAATATTAGGTCTGATGATGAAGTCAACATGCTAGGGATCCATGGAATTGGTGGAATAGGAAAAACAACTCTTGCTTTGGCAGTTTATAATTTGATTAGGCATCAATTTCAAGGTTCTTGTTTTCTTGAAAAAGTCAGagaaaattcagaaaaaaaTGGATTGATATATCTCCAAGAGATCCTTCTGTCTGAAATTGTTGGAGATAAGAATATTGGGATAACAAGTGTTAGACAAGGAATTTCAATATTACAACAGAGGCTCAATCAAAAGAAGGTTCTTTTACTTCTAGATGATGTGGACAATGAGGAGCAATTACAGGCTATCGCTGGAAAATCTGATTGGTTTGGTCTTGGAAGTAGAGTCATCATCACAACTCGGGACAAACGGTTACTAACATGTCATGGGATTGAACGTACATATGAGGTGAAGGGTTTGAATGACAAAGATGCATTTGAGTTGCTTAGATGGAAAgcttttaaaaatgaaaagactAACAAAGATTTTCCAGGTTATGTGCATGTTTTAAATCGTGCTGTAACATATGCTTCAGGCCTTCCACTCGCTTTGGAAGTCATAGGTTCTCACTTTTTTAATAAGACAATAGAGCAATGCAAATGTGCACTCGATCGTTATGAAAGGGTTCCTGATAAAAAGATCCAAACAACACTACAGCTGAGCTTTGATGCACTGCAGGAAGAAGAGAAGTTTGTTTTTCTTGACATTGCCTGTTGCTTCAAAGGATATAAATTGACAAGGGTCCAACAAATACTTCATGCTCATCATGGTGATATCATGAAAGATCATATTGATGTGTTGGTCGAAAAATCTCTCATAAAAATAAGTGAGTCTAGTAACGTGACATTACATGATTTGGTAGAGGATATGGGGAAAGAAATTGTTAGACAAGAATCACTCAAAGATCCTGAAAAACGCAGTAGGTTATGGGCCTCTAAAGATATAAATCAAGTTTTAAAAGACAATAAGgAAACAAGTAAAATTGAAATGATATATGTGAACGGTGGGATTGAAGTTGAACAGGATGGAAAAGCTTTCAACAAGATGGAAAATCTCAAAACACTACTTATTGATGAACAGGGTCATTTTGATGGAAGTCTTCCAAATAGTCTAAGAGCACTGGATTGTCGTTCATTTTGCACTTCACAAGTGGTCTTTCCCAATAAGGCAAGTGTAACATTATATCTCTATTATTTTAGGGAAAATgATTCTCTAGAAGAACTCAATCTTAGAAATTGTACTAGTCTCGAGAGTTTTTCACATGTGGTAGATTGGTCGGGGGATAAACTTAAAACCATGAATTTTAGAAGTTGCACCAATCTAAAGACTATTCCACCTCTCAAGTTGGCTTCTCTCGAAGAACTCGATCTTTCATATTGTGCTAGTCTTAAGAGTTTTCCACGTGTGGTGGACGGATTTCTTGGAAAACTTAAAACCCTGCTTATTACAAATTGTGACAATCTCAAGAGTATTCCACCTCTCAAGTTGGATTCGCTAGAAAAAGTTGACTTTTCAAATTGTCCTTTGCTTGAAAGTTGTCCATTTGCGGTGGACCAATTTCTTGGAAAACTTAAAACCCTTGTTGCTACAAATTGTCACAATCTTAGAAGTATCCCAACTCTGAAGTTGAATTCTTTAGAAGAACTTGACATTTCACATTGTTATTTCCTTGAGAGTTTTCCAAGCGATGGGTGTTTGGATAAGCTTAAATTCTTGAATATCGAAGGCTGCATGATGCTTAGGAGTCTCCCACCACTCAGGTTGACTTTGTTGGAACGGTTCAATCTTTCATATTGTCCAAATCTAGAGAGGTTTCCAGAAATATTGGGAGAGATGAGAAATATACCACAACTTCTATTGGATGGAACTACCATAAAAGAATTGCCGTTTTCATTTGAAAATGTTACTCAGCCTGAAACATTTTATCAATGTAAATGTGGAATTGTTGGTTTACCAAAAAGTGTTGCTGTGATGTCAAGGATGGCTGAATTTTCAATCGAGTATAGAACAAATGATAGCCCAATGCCATCTTCACGTGTAGAATATATTTGTCTTGAGAACTGTAACGTTTCACTTGACTATCTGTCAGATAGACTCTTGTTGTTTGCTAATGTGAAAGAATTACACCTCACTAATATTCAATTCACGGTTCTTCCTGAATCTATCAAGGAATGTAAGTTTCTATGGAGGCTGGTTTTGGACAATTGTAAGGAACTTCGGGAAATTCAAGAGATTCCTCCATGCTTAACAATGTTATCTGCACTAAATTGCAAATCGTTGACTTCTTCAAGCAAAAGCAAGTTACTGAATCAGAAATTACATGAGGCTGGAAACACTTGGTTCCTCTTACCAGAAGCAAAGATTCCAGAGTGGTTCGATCACCAAGGCTCGATaggattttcaatttcttttcgGTTTCGTAACAAGTTTCCTGCCATAATTCTCTGTTATGTTTCTCCATTTACATGGAAATCTAGAGATACAGGTCCAGTTCCTTTTAGAGTGATCATTAACGgtaaaacatttttctttacaCATGGTTTGAATGATATACGAAGGACTGATAGGAGATTATATGTGGATACACATCATTTGCATCTTTTTCATATGGAAATGGAAAATTTCAAGGATAATATTGACAAAGCACTTTTAGAAAATAAGTGGAGCCATGCAGAGGTTCACTTTGGATTTTCATTGATGTATAGTGGAATCCATGTATTGAAAGACAAAAGTAGCATGGAGGATTTTCAATTCACCAACCCAGATATTTAA 3381 0.3635 MASTTNDFAYEVFLSFRGEDTRYGFTGTLKNSLDDKGVRTFFDDEELRKGDEITPSLFKAIEDSKIAIVVLSENYASSSFCLQELTKILDSMKDKGRSVLPVFYKVDPSDIRKLQNTYGKAMAKHKASSNPNIDKWKVSLDQVANLSGFHYKEGEVYEHKFIGTIVEEVLRKIKLVALPVGDYLVGLEPQKEHVTSLLNIRSDDEVNMLGIHGIGGIGKTTLALAVYNLIRHQFQGSCFLEKVRENSEKNGLIYLQEILLSEIVGDKNIGITSVRQGISILQQRLNQKKVLLLLDDVDNEEQLQAIAGKSDWFGLGSRVIITTRDKRLLTCHGIERTYEVKGLNDKDAFELLRWKAFKNEKTNKDFPGYVHVLNRAVTYASGLPLALEVIGSHFFNKTIEQCKCALDRYERVPDKKIQTTLQLSFDALQEEEKFVFLDIACCFKGYKLTRVQQILHAHHGDIMKDHIDVLVEKSLIKISESSNVTLHDLVEDMGKEIVRQESLKDPEKRSRLWASKDINQVLKDNKETSKIEMIYVNGGIEVEQDGKAFNKMENLKTLLIDEQGHFDGSLPNSLRALDCRSFCTSQVVFPNKASVTLYLYYFRENDSLEELNLRNCTSLESFSHVVDWSGDKLKTMNFRSCTNLKTIPPLKLASLEELDLSYCASLKSFPRVVDGFLGKLKTLLITNCDNLKSIPPLKLDSLEKVDFSNCPLLESCPFAVDQFLGKLKTLVATNCHNLRSIPTLKLNSLEELDISHCYFLESFPSDGCLDKLKFLNIEGCMMLRSLPPLRLTLLERFNLSYCPNLERFPEILGEMRNIPQLLLDGTTIKELPFSFENVTQPETFYQCKCGIVGLPKSVAVMSRMAEFSIEYRTNDSPMPSSRVEYICLENCNVSLDYLSDRLLLFANVKELHLTNIQFTVLPESIKECKFLWRLVLDNCKELREIQEIPPCLTMLSALNCKSLTSSSKSKLLNQKLHEAGNTWFLLPEAKIPEWFDHQGSIGFSISFRFRNKFPAIILCYVSPFTWKSRDTGPVPFRVIINGKTFFFTHGLNDIRRTDRRLYVDTHHLHLFHMEMENFKDNIDKALLENKWSHAEVHFGFSLMYSGIHVLKDKSSMEDFQFTNPDI 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03476 1126 Gene3D - 3 171 IPR035897 -
Tsu06g03476 1126 SUPERFAMILY L domain-like 790 958 - -
Tsu06g03476 1126 Gene3D - 342 429 IPR042197 -
Tsu06g03476 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 439 IPR027417 -
Tsu06g03476 1126 Pfam NB-ARC domain 192 410 IPR002182 GO:0043531
Tsu06g03476 1126 SMART till_3 9 146 IPR000157 GO:0007165
Tsu06g03476 1126 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 1099 IPR044974 GO:0006952
Tsu06g03476 1126 Gene3D Ribonuclease Inhibitor 856 981 IPR032675 -
Tsu06g03476 1126 Gene3D Ribonuclease Inhibitor 723 818 IPR032675 -
Tsu06g03476 1126 Gene3D - 172 335 IPR027417 -
Tsu06g03476 1126 SUPERFAMILY "Winged helix" DNA-binding domain 415 523 IPR036390 -
Tsu06g03476 1126 Pfam TIR domain 9 172 IPR000157 GO:0007165
Tsu06g03476 1126 PANTHER ARCHAEAL ATPASE 20 1099 - -
Tsu06g03476 1126 Gene3D Ribonuclease Inhibitor 457 721 IPR032675 -
Tsu06g03476 1126 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 149 IPR035897 -
Tsu06g03476 1126 SUPERFAMILY RNI-like 601 826 - -
Tsu06g03476 1126 PRINTS Disease resistance protein signature 208 223 - -
Tsu06g03476 1126 PRINTS Disease resistance protein signature 650 666 - -
Tsu06g03476 1126 PRINTS Disease resistance protein signature 284 298 - -
Tsu06g03476 1126 PRINTS Disease resistance protein signature 380 394 - -
Tsu06g03476 1126 ProSiteProfiles TIR domain profile. 8 173 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03476 Tsu-Chr6 45821487 45837188 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03476 205 832 WRKY Transcription Factor Family AT5G45050 30.253 1.24e-59 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03476 - - cam:101511404 1308.89