Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03474 ATGTATGAGCATGAGTTTATTGTAAAGATTGTTGAAGAAGTCTTAAAAAAGATAACACTTGGTATTACCTTACATGTTGGTGATTACCCAGTTGGGCTGGAGCCTAAAAAACAACGTGTGATTTCACTTTTGAATGTTGGGTCTGATGATACAGTCCGCATGGTAGGGATCTATGGGATTGGTGGAATAGGGAAAACCACTCTTGCTTTAGAAGTTTATAATTCGATTTTCCATCAATTTCAATGTTCCTGTTTTCTTAAAGTCAAAGAAAATTATCACGATAATGGGTTGGTACTCCAAAAGATCCTTCTGTCTCAAATTGTTGAAAAGAACATTTACATAAAAAGTGTTGAAGAAGGAATTccaatattaagaaaaatgctcAGCAAAAAGAAAGTTCTTTTGCTTCTAGACGATGTTGACAATGAGAAGCAATTACAGGTTATTGCTGGAAAATCTTGGTTTGGTCTTGGCAGTAGAGTCATCATCACAACTCGGAACCAAAGGTTGCTAACATTGCATGGGGTTGAAGCTGAACATACATATGAGGTGAAGGAGTTGAATTACAAAGATGCTTTTGAGTTGgGAAACAGTAAAATTGGAATCATATATGTGAACAATTGGATTAAAGTTGAACATGATGGAAAAGCTTTCAACAAGATGGAAAATCTCAAAACACTACTTATTGATAAACGTGGTCATTTTTATGGAAGTCTCAAACATCTTCCAAATAGTCTAAGAGTACTGGATTGTCGTTTATCATATTTCCCAATACAAGCAGTCTTTCTCAATAAGGCAAATTTTTCCATCCAGTATAGAACAAATGTGAGCCCAATGCCATCTTCACCAGTTGAATATATTTGTCTTGAGAACTGCAAAGTTTCACTTGACTATCTGTCAGATAGACTCTTGTTGTTTGCTAATGTGAAAGAATTACACCTCACTAAAAATCGATTGACGGTTCTTCCTAAATCTATCAAGGAATGTAGGTTGTTATTGAAGCTTGTCTTGGACGATTGTAAAGAACTTCAGGAAATTCAAGAGATTCCTCCATCATTAAAAATTTTATCCGCACTAAACTGCCAATCGCTGACTTCGTCATGCAAAAGCAAATTACTAAATCAGGCTGGAAACACTTGGCTCCGCTTGCCACGAGCAAAGATTCCAGAGTGGTTCCATCAGCCATGGTTGGCAGGATTGCCAATTTCATTTTGGTTTCGTAAGTTTCCTACGATAATTCTGTGTGTTTCTTCTCCGTTGACATGGGCATGGGATTCTCGACTTCCTGCAAGAGTGATCATCAATGGCAATACATTTTTCATTAAGCATGGTTTGAATATACCTAGGACATCACCTCCAGATACATATCATTTGCTAATGGAAAATTTCAATGGTAAAATGGACAATGCACTTTTAGTAAATAAGTGGAACTATGCAGAGGTTGACTTTGGATTCCCATTCATGTATAGTGGTATCCATGTATTGAAAGACAAAAGTAGCATGGAGGATATTCAATTCACCAACCCAGATATTGAGTTGTACTAA 1545 0.3605 MYEHEFIVKIVEEVLKKITLGITLHVGDYPVGLEPKKQRVISLLNVGSDDTVRMVGIYGIGGIGKTTLALEVYNSIFHQFQCSCFLKVKENYHDNGLVLQKILLSQIVEKNIYIKSVEEGIPILRKMLSKKKVLLLLDDVDNEKQLQVIAGKSWFGLGSRVIITTRNQRLLTLHGVEAEHTYEVKELNYKDAFELGNSKIGIIYVNNWIKVEHDGKAFNKMENLKTLLIDKRGHFYGSLKHLPNSLRVLDCRLSYFPIQAVFLNKANFSIQYRTNVSPMPSSPVEYICLENCKVSLDYLSDRLLLFANVKELHLTKNRLTVLPKSIKECRLLLKLVLDDCKELQEIQEIPPSLKILSALNCQSLTSSCKSKLLNQAGNTWLRLPRAKIPEWFHQPWLAGLPISFWFRKFPTIILCVSSPLTWAWDSRLPARVIINGNTFFIKHGLNIPRTSPPDTYHLLMENFNGKMDNALLVNKWNYAEVDFGFPFMYSGIHVLKDKSSMEDIQFTNPDIELY 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03474 514 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 195 IPR044974 GO:0006952
Tsu06g03474 514 SUPERFAMILY RNI-like 212 374 - -
Tsu06g03474 514 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 265 484 IPR044974 GO:0006952
Tsu06g03474 514 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 199 256 IPR044974 GO:0006952
Tsu06g03474 514 Gene3D Ribonuclease Inhibitor 202 390 IPR032675 -
Tsu06g03474 514 Pfam NB-ARC domain 36 198 IPR002182 GO:0043531
Tsu06g03474 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 201 IPR027417 -
Tsu06g03474 514 PANTHER ARCHAEAL ATPASE 2 195 - -
Tsu06g03474 514 PRINTS Disease resistance protein signature 239 253 - -
Tsu06g03474 514 PRINTS Disease resistance protein signature 127 141 - -
Tsu06g03474 514 PRINTS Disease resistance protein signature 327 343 - -
Tsu06g03474 514 PRINTS Disease resistance protein signature 54 69 - -
Tsu06g03474 514 PANTHER ARCHAEAL ATPASE 265 484 - -
Tsu06g03474 514 PANTHER ARCHAEAL ATPASE 199 256 - -
Tsu06g03474 514 Gene3D - 24 177 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03474 Tsu-Chr6 45775942 45779645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03474 3 188 WRKY Transcription Factor Family AT4G12020 32.642 2.01e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03474 - - mtr:MTR_3g006280 321.627