Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03471 ATGGCTTCCATCATTGATGAATATGTGTACGACGTATTCCTTAGTTTTAGAGGCGAGGATACTCGCTATGGTTTCACTGGCAATCTCAAAAATGCTCTTGATGGCAAAGGAGTCAGAACTTTCATGGATGACGAGGAACTTCAAAAAGGGGATGAAATCACTCCATCACTTCTCAAGGCAATTGACGAGTCCATGATTGCCATCGTTGTCCTCTCTAAAAATTATGCTTCTTCCACCTTTTGCTTACAAGAACTTTCTAAGATCCTTGAGTCCATGAAAGATAAGGATAAGGGTCGTTCTGTTTTGCCGGTATTTTATAAGGTGGATCCTTCTGATgtaagaaaattgaaaaggaCGTATAGAGAAGCTTTGGATAAACATGATGAGGCCAGCTCCTCTGGTCATAACATGACTAATAAATGGAAGGCGTCTCTTCACCAAGTTGCTAATTTGTCCGGATTTCATTACAAGAAAGGGGAGGGGTATGAGCATGAGTTTATTGGGATGATAGTTGAAAAAGTCTTAAGAAAGATAAAACTCATTGCTTTACCTGTTGGTGATTACCTAGTTGGATTGGAGCCCCAAAAACAACATCTGACTTCCCTTCTGAATGTTGGGTCTGATGATGAAGTCAATATGTTAGGGATTCATGGAATTGGTGGAATAGGGAAAACAACTCTTGCTTTAGCAGTTTATAATTCGATTGCCAATCAATTTCAAGGTTCCTGTTTTCTTGAAAAAGTCAgagaaaattcaaacaaaaatggGTTGATATATCTCCAAAAGATCCTTTTATCTCAAATGGCTGGAAATAATATTGAGATAACAAGTGTTAGAGAAGGAATTTCAATATTACAACAAAGGCTCCACCAAAAGAAGGTTCTTTTGCTTCTAGATGATGTTGACAAGGAGGAGCAATTAGAGGCTATTGTTGGAAGATCCGATTGGTTTGGTCTTGGTAGTAGAGTTATCATCACGACTCGGGACAAAAGGTTGCTAACATGTCATGGGGTTGAACATACACATGAGGTGAAGGGGTTGAATGACAAAGATGCTTTTGAGTTGGTTAGATGGAAAGcttttaaaagtgaatttaGTCCAAGCTATGATGATGTTTTATTAGCAAAAATGCATACCAGAAAATTGGATGTGAACGATTTGGTTAGACCTAAAGCATTAAAGATTGACAAAGTTTTTTCAGGTTATGTGCATGTTTTAGAACGTGCGGTAGCATATGCTTCTGGCCTAGCATATGCTTCTGGCCTTCCGCTCGCTTTGGAAGTCATAGGTTCTCACTTTTTTAATAAGACAATAGAGCAATGTAAATGTGCACTCGATCGTTATGAAAGGGTTCCTGATAAAAAGATCCAAACAACACTACAGCTGAGCTTTGATGCTCTGCAGGAAGAAGAGAAGTTTGTTTTTCTTGACATTGCCTGTTGCTTCAAAGGATATAAATTGACAAGGGTCGAACAAATACTTCATGCTCATTATGGTGATATCATGAAAGATCATATTGATGTGTTGGTCGAAATATCTCTCATAAAAATAAGTGAGTATGGTAATGTGACATTACATGATTTGGTAGAGGATATGGGGAAAGAAATTGTTAGACAAGAATCACTGAAAGATCCTGGAAAACGCAGTAGGTTATGGGCCTCTAAAGATATAAATAAAGTTCTAAAAGAAAATACGggaACAAGTAAAATTGAAATCATACATTTTGACTGTTGGATTGAAGTTGAATGGGATGGAGAAGCTTTCAAGAAGATGGAAAATCTCAAAACACTAATTATTAGGCATGTTGATTTTTCTGAAAGTCCTAAACATCTTCCAAATAGTCTAAGAGTACTGGAATGGTGCATTTATCCTTCATCTGATTTACCATCTGGTTTTTATCCGAAGGAACTTGTTATATGCAATTTTCGCTCATGCCTTACATCAAATCAATTTGAGTGGGAGAGTTTTCTCAAGAAGGCAAGTCTaacatatttatatttcttatcTTATATTAATAATCCATTCCAGAATATGAGAGTGTTAAATTTTGATCACTGTAAACTTTTAGCACAAATACCTGACATATCTGGTCTTCCAAATTTAGAagaattttcaattcaaaattgtAGGAATCTAattacaattgacaaatcagtTGGTTTTTTGCGTAAGCTTAAAATCTTAAGAATTATAAGTTGCACTAAAATCCAGAGTCTAAGGAGTATTCCACCTCTTAAGTTGGCTTCTCTTGAAAAACTCGATCTTTCAAATTGTACTAGTCTTGAGATTTTTCCACATGTCGTGGATGGGTTGGTGGATAAGCTTAAAACCATGAGTGTTAGAAGATGCATCAAGTTAAGGAGTATTCCACCTCTCAAGTTGGATTCGCTAGAAACACTTGACCTTTCCTGTTGTTATAGTCTTGAGAGTTTTCCACTTGTGGTGGACGAGTTTCTTGGAAAACTTAAAACCCTTCTTGTTGAAAGTTGTCACAATCTCAAGAGTATTCCACCTCTCAAGAGTATTCCACCTCTCAAGTTGGATTCGCTAGAAAAACTTGACCTTTCAAACTGTTATAGGATTGAGAGTTTTCCACTTGTGGTGGATGGGTTTCTTGGAAAACTTAAAACCCTGCTTGTTGAAAGTTGCCACAATCTCAGGAGTATTCCACCTCTTAAGTTGTATTCACTAGAAAAACTAGACCTTTCAAATTGTTATAGGCTCGAGAGTTTTCCAAGTGTGGTGGATGGGTTGTTGGATAAACTTAAATTCTTGAATATTGACTATTGCATCAGGCTTCGGAGTATCCCACCACTCAGGCTGACTTCGTTGGAACAATTTAATCTTTCATATTGTCCAAGTCTAGAGAGTTTTCCAGAAATATTGGGAGAGATGAGAAATATACCACGACTTCTCTTGGATGAAACTCCCATAAAAGAATTGCCGTTTCCATTTCAAAATCTTACTCCACCTGAAACATTTTCTGATATACCAAAAGAATTGCCTTTGACGTGTGCATTTCATAACTCTTTTGTTGATTTACCAAAAGAGTTGATGCGAAGTCAATGCTGGCTGGATTTGCCATCGAGTATAGGACAAATGTGA 3105 0.3601 MASIIDEYVYDVFLSFRGEDTRYGFTGNLKNALDGKGVRTFMDDEELQKGDEITPSLLKAIDESMIAIVVLSKNYASSTFCLQELSKILESMKDKDKGRSVLPVFYKVDPSDVRKLKRTYREALDKHDEASSSGHNMTNKWKASLHQVANLSGFHYKKGEGYEHEFIGMIVEKVLRKIKLIALPVGDYLVGLEPQKQHLTSLLNVGSDDEVNMLGIHGIGGIGKTTLALAVYNSIANQFQGSCFLEKVRENSNKNGLIYLQKILLSQMAGNNIEITSVREGISILQQRLHQKKVLLLLDDVDKEEQLEAIVGRSDWFGLGSRVIITTRDKRLLTCHGVEHTHEVKGLNDKDAFELVRWKAFKSEFSPSYDDVLLAKMHTRKLDVNDLVRPKALKIDKVFSGYVHVLERAVAYASGLAYASGLPLALEVIGSHFFNKTIEQCKCALDRYERVPDKKIQTTLQLSFDALQEEEKFVFLDIACCFKGYKLTRVEQILHAHYGDIMKDHIDVLVEISLIKISEYGNVTLHDLVEDMGKEIVRQESLKDPGKRSRLWASKDINKVLKENTGTSKIEIIHFDCWIEVEWDGEAFKKMENLKTLIIRHVDFSESPKHLPNSLRVLEWCIYPSSDLPSGFYPKELVICNFRSCLTSNQFEWESFLKKASLTYLYFLSYINNPFQNMRVLNFDHCKLLAQIPDISGLPNLEEFSIQNCRNLITIDKSVGFLRKLKILRIISCTKIQSLRSIPPLKLASLEKLDLSNCTSLEIFPHVVDGLVDKLKTMSVRRCIKLRSIPPLKLDSLETLDLSCCYSLESFPLVVDEFLGKLKTLLVESCHNLKSIPPLKSIPPLKLDSLEKLDLSNCYRIESFPLVVDGFLGKLKTLLVESCHNLRSIPPLKLYSLEKLDLSNCYRLESFPSVVDGLLDKLKFLNIDYCIRLRSIPPLRLTSLEQFNLSYCPSLESFPEILGEMRNIPRLLLDETPIKELPFPFQNLTPPETFSDIPKELPLTCAFHNSFVDLPKELMRSQCWLDLPSSIGQM 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03471 1034 Pfam TIR domain 10 177 IPR000157 GO:0007165
Tsu06g03471 1034 SUPERFAMILY L domain-like 821 1026 - -
Tsu06g03471 1034 Gene3D - 415 468 IPR042197 -
Tsu06g03471 1034 PANTHER ARCHAEAL ATPASE 20 858 - -
Tsu06g03471 1034 PANTHER ARCHAEAL ATPASE 831 995 - -
Tsu06g03471 1034 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
Tsu06g03471 1034 ProSiteProfiles TIR domain profile. 8 178 IPR000157 GO:0007165
Tsu06g03471 1034 Pfam NB-ARC domain 207 368 IPR002182 GO:0043531
Tsu06g03471 1034 Gene3D - 177 340 IPR027417 -
Tsu06g03471 1034 PRINTS Disease resistance protein signature 419 433 - -
Tsu06g03471 1034 PRINTS Disease resistance protein signature 288 302 - -
Tsu06g03471 1034 PRINTS Disease resistance protein signature 213 228 - -
Tsu06g03471 1034 PRINTS Disease resistance protein signature 745 761 - -
Tsu06g03471 1034 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 858 IPR044974 GO:0006952
Tsu06g03471 1034 SMART till_3 9 151 IPR000157 GO:0007165
Tsu06g03471 1034 Gene3D Ribonuclease Inhibitor 568 741 IPR032675 -
Tsu06g03471 1034 SUPERFAMILY "Winged helix" DNA-binding domain 454 562 IPR036390 -
Tsu06g03471 1034 Gene3D Ribonuclease Inhibitor 871 1008 IPR032675 -
Tsu06g03471 1034 Gene3D Ribonuclease Inhibitor 742 868 IPR032675 -
Tsu06g03471 1034 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 831 995 IPR044974 GO:0006952
Tsu06g03471 1034 Coils Coil 113 133 - -
Tsu06g03471 1034 SUPERFAMILY L domain-like 525 891 - -
Tsu06g03471 1034 Gene3D - 9 176 IPR035897 -
Tsu06g03471 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 372 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03471 Tsu-Chr6 45729794 45734707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03471 772 989 WRKY Transcription Factor Family AT4G12020 30.045 4.95e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03471 - - mtr:MTR_6g079140 1218.76