Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03470 ATGGATCCAAAATTGTGTGATGAATCATTGAACGATGCTTCAGATTTCAAGTGTGAGAAGATTCTTCACACagttgataaatcaattgtatGTCCCACTCCAGATAAGAAGACGGAACAATTACCCATCAAATTCAAACATCCCAAAACCCAGCTTCCAGAAAAgTACAAGACCATTGCTGATTTGTTTAGTCATATGAGTTGTGCACTTAGATTGCTGCATCTGCGTAAAAAGTCTCCaacttttcaaaatatttgcaACAAGGTTGAAATTCTTGCCAAAAgAAAATTCTCCCATGCTCATCTAGCTCAGATGAAATATATACTTCCTGAAGGTATAGAAATTGAAAAGGTGGTGGTTGTTGATAAGAAGAGCTTGTGTATGAAACCGGATTTGAAGATCACCTTGGTATTTGAAGTTCTAGAAGATCATTCTGAACAGTCTGCTTATATGGCTCTTGGACGATATTTTAATTCCAAGCTGATTAATTTCTTTAATCAGCATCCCGAGGGTACTGATATTCCAGAAGTCACACTACCAGAGCCCTTTAGCAAAAAAGCTTGTAACTTGATTTTCAAAGATGGCCCTGTAAATCTGTCAACGGAACATTCATTGACTTGCAGTGAAGTTGAACTGTCTCTGAACAACTTGCACTTGAGCCCATCTTTTAGAAGACATTTTTCTCAGAAGAATGTTACTGACCAGACTGAGCAAGTTCAGTACATTTCATCATCTAAAAATTCGCTGTTATCCCATGAATCCGACTGCCTAGAACACCAAGAAAGTGAAGGCACATGGCTGAAAGAACGTACACAATTGTCTGATAGTGTCAGTAATCTTAATGCAGAAAGAGGCAAGCAGAAGGAATCACACTCAATGTGTTTTCAAACAAATGTTATTAATACACCAGTACATAAGATCTCCCCTCCATGTTCTGAAAGCCCTGATTGGAAAATTGTCTCCGGTACTGATAGTTTTTTGACTCAGACACCTGCACAGTCAGCACCTGAGAGATTGGTGCTTGGCTCTGATGTTAAGCTTCAAAAACTGACGGGTCAAAAGTCTACGTTCTCTTTTAAGCCTGCAAAAAGAGTGCTTGACTTTTCACTCACAGAAGGCAGTGATGATTTGGACAATAGAGTAGACATGTCAAAACCTAGCAGAGGATGTTCTGAGGACGTCAAATCTTTTGATTCTGTTTCCCTACTTCAGGAGGTACAAGAGAACCTTCATTATTCTGTagaaaaaatcaaccaaaatgACATTGGTTTGGATGCATTGAATGACAATTCTTCATCATTGGTGGAACTGGTTAATGTGATTGACTCTATATTTAGAACTGTCAAAAGAACTTCAATCACAAAAGAGGAGCTCCTGCAAAAGATAACGATGAACTGTTTAGATTTTGTCGAGATTAGTGAAGCTGAAGAACAGATCGAGATTTTGGAAAAGATTGCACCGGATTGGATTTGCAAGAAGTTGGTTTCTTCTGGAGACACTATGTACTGTGTCAAGAATGCAGTAGATTTGGAGTCAATTCGATCAAGACTTGTCAGCAATGTGACCAAAGGAGATGAGTGA 1581 0.3763 MDPKLCDESLNDASDFKCEKILHTVDKSIVCPTPDKKTEQLPIKFKHPKTQLPEKYKTIADLFSHMSCALRLLHLRKKSPTFQNICNKVEILAKRKFSHAHLAQMKYILPEGIEIEKVVVVDKKSLCMKPDLKITLVFEVLEDHSEQSAYMALGRYFNSKLINFFNQHPEGTDIPEVTLPEPFSKKACNLIFKDGPVNLSTEHSLTCSEVELSLNNLHLSPSFRRHFSQKNVTDQTEQVQYISSSKNSLLSHESDCLEHQESEGTWLKERTQLSDSVSNLNAERGKQKESHSMCFQTNVINTPVHKISPPCSESPDWKIVSGTDSFLTQTPAQSAPERLVLGSDVKLQKLTGQKSTFSFKPAKRVLDFSLTEGSDDLDNRVDMSKPSRGCSEDVKSFDSVSLLQEVQENLHYSVEKINQNDIGLDALNDNSSSLVELVNVIDSIFRTVKRTSITKEELLQKITMNCLDFVEISEAEEQIEILEKIAPDWICKKLVSSGDTMYCVKNAVDLESIRSRLVSNVTKGDE 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03470 526 Pfam DNA replication factor Cdt1 C-terminal domain 431 490 IPR032054 -
Tsu06g03470 526 CDD Cdt1_m 34 185 IPR014939 -
Tsu06g03470 526 Gene3D - 426 524 IPR038090 -
Tsu06g03470 526 PANTHER DNA REPLICATION FACTOR CDT1 5 519 IPR045173 GO:0003677|GO:0030174|GO:0071163
Tsu06g03470 526 Pfam DNA replication factor CDT1 like 52 117 IPR014939 -
Tsu06g03470 526 SMART CDT1_2 52 181 IPR014939 -
Tsu06g03470 526 SUPERFAMILY "Winged helix" DNA-binding domain 45 183 IPR036390 -
Tsu06g03470 526 PANTHER EXPRESSED PROTEIN 5 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03470 Tsu-Chr6 45724274 45729143 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03470 49 517 Core DNA Replication Machinery Family AT2G31270 29.184 1.74e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03470 K10727 - gmx:102670055 564.303