Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03444 atgGCAACTCGTAGGTATGCTTTTGGAAGAGCTGATGAAGCTACACATCCAGATTCTATTAGAGCTACCATAGCTGAATTTGCTTCCACTTTCATCTTTGTCTTTGCCGGAGAAGGCTCTGGCCTTGCTTTGGTTAAGATTTACCAAGATTCAGCATTCTCAGCTGGTGAACTGTTAGCAGTTGCACTTGCACATGCATTTGCTCTATTTGCTGCTGTGTCTTCTAGCGCGCATGTATCTGGTGGCCATGTTAACCCAGCAGTGACATTTGGTGCTCTCATAGGTGGTAGGATCTCTGTGCTTCGCGCTGTCTACTATTGGATTGCTCAACTTCTTGGTGCTATTGTAGCTGCCCTCTTGCTTAGGCTTGTCACTAATAATATGAGACCAGCAGGGTTTCATGTGGCACATGGTATAGGGGCAGGACATGGACTTATACTTGAAATTATCATGACATTTGGGCTAATGTACACAGTATATGCAACTGCAATTGATCCTAAAAGGGGTACTAATGGAGCCCTTGCACCTTTGGCAATTGGACTTATTGTTGGTGCAAATATCCTAGTTGGTGGACCATTTGATGGAGCATGCATGAACCCTGCTCTTGCTTTTGGACCTTCTTTGGTGGGTTGGAGATGGCATTACCACTGGATCTTCTGGGTTGGTCCATTCATTGGTGCAGCATTGGCAGCActcatatatgaatatattgTGATCCCAACTGAGCCACCTCATGCACACCAGCCTCTGGCTCCTGAAGATTACTAG 768 0.4479 MATRRYAFGRADEATHPDSIRATIAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLAVALAHAFALFAAVSSSAHVSGGHVNPAVTFGALIGGRISVLRAVYYWIAQLLGAIVAALLLRLVTNNMRPAGFHVAHGIGAGHGLILEIIMTFGLMYTVYATAIDPKRGTNGALAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHYHWIFWVGPFIGAALAALIYEYIVIPTEPPHAHQPLAPEDY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03444 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g03444 255 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g03444 255 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 255 - -
Tsu06g03444 255 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g03444 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Tsu06g03444 255 Gene3D Glycerol uptake facilitator protein. 4 245 IPR023271 -
Tsu06g03444 255 SUPERFAMILY Aquaporin-like 13 245 IPR023271 -
Tsu06g03444 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g03444 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g03444 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g03444 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g03444 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g03444 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g03444 255 PANTHER AQUAPORIN-8 1 255 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03444 Tsu-Chr6 45435870 45437809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03444 2 255 Major Intrinsic Protein MIP AT1G73190 74.242 9.65e-127 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03444 K09873 - gmx:100805863 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03444 06 45435870 45437809 Tsu06g03444 06 45435870 45437809 ECH