Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03435 ATGACAACATCATCACCATACATGAAACATGCATTTCACTTTGTTCTGACTTTATTGTTCATCTTATTAAACCATACAAATTCTCAATCTCATTCTAATCAATATAATCAACAACATAAAGTCCTATTAAATATTAAACAATACCTTCAAAACCCTTCTTTCCTTAACCATTGGACATCAAATTCAAATCACTGTTTTTGGAATGAAATCAATTGCAAAAATGATTCTGTTACTGGAATCACTCTTTCACATAAGAACATTACAAAAACAATACCACCCTTTATTTGTAATGAGCTCAAAAACCTAACACATGTTGATTTTAGTTCCAATTTTATCCCTGGTGATTTTCCAAcacttttttataattgttcaaaTCTTGTTTACTTAGACCTTTCTTTGAACAATTTTGATGGTAAAATTCCTAATGATATTGGAAATTTGAGTCCTAGTTTGCAATATCTTAATCTTAGTTCAACAAATTTTCATGGTGGTGTTCCTGATGGGATTGGAAAGTTAAAGGAATTGAAAGAACTTAGAATTCAATATTGTTTATTGAATGATACTGTTTCTGATGAGATTGGTGAATTGTTGAATCTTGAGTATTTTGATTTGTCCTATAATACTATGTTTCCTTCATGGAAATTGCCATTGAGTTTGACCAAGTTGAATAAATTGAAGGTTTTTAATGTTTATGCCTCTAACTTGTTTGGTGAAATACCTGAAAGAATTGGAGATATGGTTTCTTTGGTGAGATTTGATGTGTCAGATAATGGTTTAACTGGTGAAATTCCTAGTGGTTTGTTCATGTTGAAGAATTTGAGTATACTTTTTCTTTACAATAACAAGCTCTCTGGAGAGATACCTAGTTTGGTTGAAGCATTGAGTTTGACTAAACTTGATCTTGCAAACAACAACCTTGTAGGGAAAATACCAGAAGATTTAGGAAAGCTTCAAAAGTTAACATGGTTGAGTTTGTCTATGAATAGTTTATCAGGTGTGATACCAGAAAGTTTAGGCCTTCTTCCGTCTCTTACCgattttcttctgttttttaacaatttatcaGGTACTATTCCTCCTGAACTCGGTCGCAGTTCAAAGCTCAAAACCTTTCATGTTGCAAATAATAGTCTTGTTGGAAAGTTACCTGAGAATTTATGCTATTTTGGTGAGTTGCTTAATTTGACAGCTTATGAAAATGGTCTTAGTGGAGAGTTACCAAAATCACTAGGAAATTGTAGTAGCTTGTTGGACttgaaaattaacaaaaatgaattttctGGTATTATTCCTAGTGGTCTTTGGACATCTTTCAATTTATTACACTTCATGGTAAGCAATAATAAATTCAATGGTGTGATTCCAGAAAAGTTGTCTTCGAACATTTCGAGGTTCGAGATAGCTAACAATCAATTTTCTGGTAGAATTCCATCTGGAGTATCTTCATGGACTAATGTCGTAGTGTTTGATGCAAGTAACAACTTGTTAAATGGAAGTATTCCACAAGAGATAACATCTCTTCCAAAGTTAACAACTCTTTTGCTTGATCAAAATCAGTTCAATGGTCCACTTCCATCAGATATAGTATCATGGAAGTCCTTAGTAATTCTTAATCTGAGCCAAAACAAACTTTCTGGTCAAATTCCGGATGCAATTGGAAAATTACCTGTCCTAGGTCTACTTGATTTGTCTGAAAATGAATTTTCAGGCAAAATTCCATCTCAACTTCCTAGACTCACCAATCTCAATCTGTCATCTAATCATTTGACAGGAACGGTTCCAGGtgaatttcaaaatcaagtGTTTGCTACAAGTTTTTTGGCTAATTCTGGTCTTTGTGCCGATACACCAATACTAAACATCGCTTTGTGCAATTCTGGCATTCAAAGTGGAAACAAAGGATCATCATGGTCTATTGGTTTGATTATAGGCCTTGTGGTAGCGGCAATTTTTTTGGCTTTTGTGGCCAGTTTCTTGATTATCAAAGCTTTCAAGAAAAGAAAGGAAGGTTTGGATAATTCATGGAAGCTTATTTCCTTTCAGAGGCTCAGTTTCGATGAAACAAGCATTGTCTCATCAATGACAGAACAAAATATTATTGGAAGTGGTGGATATGGCATGGTTTATCGAGTTGATGTCGATGGTTTAGGCTATGTTGCTGTGAAAAAGATATGGAATAACAAAAAGTTGGACGACAAACTCAGGAGTTCGTTTTGCGCTGAAGTTAAAATATTGAGCAATATTCGTCATAATAACATTGTGAGATTGTTGTGCTGTATCTCTAATGACGATTCTATGCTTCTTGTCTATGAGTATCTTGAAAAACGTAGTCTAGATAAGTGGCTGCGCACGAAGAGTAAGTCATTGTCATCAACTTTGTCAGGTTTAGTCCACCAACCTTTTGTTCTTGATTGGCCAAAGAGGTTGAAAATAGCTATTGGAGCTGCTCAAGGTTTGAGCTACATGCATCATGATTGTTCACCACCTATTATTCATAGAGATGTTAAAACAAGCAACATACTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGACTTGCAAGGATTTTAGTCAAGCCAGATGAACTTAACACAATGTCATCTGTGATTGGCTCATTTGGCTACATTGCTCCAGAATATGTTCAAACAACAAGAGTCACTGAAAAGATTGATGTGTTTAGCTTTGGAGTTGTCCTATTGGAACTAACAACTGGTAAAGAAGCTAACTATGGAGACGAATACTCGTCACTTTCGGAGTGGGCATGGCGTCAAACTTTGTTAGGAATCAATGTAGAAGAATTGCTAGACAAAGATGTGATGGAAGCTAGTTACTTGGATGAAATGTGCACAGTTTTCAAACTTGGTGTCATGTGTACTGCAACATTGCCTTCTAGTAGGCCTTCCATGAAAGAAGTGACGCAGATATTGCTTAGCTTTGCAGAACCATTAGCTTATGGACAGAATAAAGTTGGTCACAACTATGATGCTGATCCTCTTCTTAAGAATTCAAAAAGTGACACTAGGTTGGATGTTGATGATATGTGA 3051 0.3438 MTTSSPYMKHAFHFVLTLLFILLNHTNSQSHSNQYNQQHKVLLNIKQYLQNPSFLNHWTSNSNHCFWNEINCKNDSVTGITLSHKNITKTIPPFICNELKNLTHVDFSSNFIPGDFPTLFYNCSNLVYLDLSLNNFDGKIPNDIGNLSPSLQYLNLSSTNFHGGVPDGIGKLKELKELRIQYCLLNDTVSDEIGELLNLEYFDLSYNTMFPSWKLPLSLTKLNKLKVFNVYASNLFGEIPERIGDMVSLVRFDVSDNGLTGEIPSGLFMLKNLSILFLYNNKLSGEIPSLVEALSLTKLDLANNNLVGKIPEDLGKLQKLTWLSLSMNSLSGVIPESLGLLPSLTDFLLFFNNLSGTIPPELGRSSKLKTFHVANNSLVGKLPENLCYFGELLNLTAYENGLSGELPKSLGNCSSLLDLKINKNEFSGIIPSGLWTSFNLLHFMVSNNKFNGVIPEKLSSNISRFEIANNQFSGRIPSGVSSWTNVVVFDASNNLLNGSIPQEITSLPKLTTLLLDQNQFNGPLPSDIVSWKSLVILNLSQNKLSGQIPDAIGKLPVLGLLDLSENEFSGKIPSQLPRLTNLNLSSNHLTGTVPGEFQNQVFATSFLANSGLCADTPILNIALCNSGIQSGNKGSSWSIGLIIGLVVAAIFLAFVASFLIIKAFKKRKEGLDNSWKLISFQRLSFDETSIVSSMTEQNIIGSGGYGMVYRVDVDGLGYVAVKKIWNNKKLDDKLRSSFCAEVKILSNIRHNNIVRLLCCISNDDSMLLVYEYLEKRSLDKWLRTKSKSLSSTLSGLVHQPFVLDWPKRLKIAIGAAQGLSYMHHDCSPPIIHRDVKTSNILLDAQFNAKVADFGLARILVKPDELNTMSSVIGSFGYIAPEYVQTTRVTEKIDVFSFGVVLLELTTGKEANYGDEYSSLSEWAWRQTLLGINVEELLDKDVMEASYLDEMCTVFKLGVMCTATLPSSRPSMKEVTQILLSFAEPLAYGQNKVGHNYDADPLLKNSKSDTRLDVDDM 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03435 1016 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 13 1009 - -
Tsu06g03435 1016 Gene3D Phosphorylase Kinase; domain 1 674 772 - -
Tsu06g03435 1016 SMART LRR_typ_2 270 294 IPR003591 -
Tsu06g03435 1016 SMART LRR_typ_2 317 340 IPR003591 -
Tsu06g03435 1016 SMART LRR_typ_2 507 531 IPR003591 -
Tsu06g03435 1016 SMART LRR_typ_2 341 365 IPR003591 -
Tsu06g03435 1016 SMART LRR_typ_2 576 599 IPR003591 -
Tsu06g03435 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Tsu06g03435 1016 SUPERFAMILY L domain-like 45 379 - -
Tsu06g03435 1016 Gene3D Ribonuclease Inhibitor 36 148 IPR032675 -
Tsu06g03435 1016 Gene3D Ribonuclease Inhibitor 294 364 IPR032675 -
Tsu06g03435 1016 Gene3D Transferase(Phosphotransferase) domain 1 773 995 - -
Tsu06g03435 1016 SUPERFAMILY Protein kinase-like (PK-like) 687 978 IPR011009 -
Tsu06g03435 1016 Gene3D Ribonuclease Inhibitor 365 627 IPR032675 -
Tsu06g03435 1016 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Tsu06g03435 1016 SMART serkin_6 694 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03435 1016 Gene3D Ribonuclease Inhibitor 213 293 IPR032675 -
Tsu06g03435 1016 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 13 1009 - -
Tsu06g03435 1016 Pfam Leucine rich repeat 295 354 IPR001611 GO:0005515
Tsu06g03435 1016 Pfam Protein kinase domain 696 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03435 1016 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524
Tsu06g03435 1016 Gene3D Ribonuclease Inhibitor 149 212 IPR032675 -
Tsu06g03435 1016 ProSiteProfiles Protein kinase domain profile. 694 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03435 1016 SUPERFAMILY RNI-like 294 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03435 Tsu-Chr6 45338890 45342826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03435 33 1015 Receptor kinase-like Gene Family AT5G25930 48.690 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu06g03435 Pkinase 6.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03435 - - gmx:100813894 1409.05