Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03411 ATGGAGATAGAACCAAGTTATAATAATAAACCAACAACATTAGGAAATGAAGTAGCAACAAATTTACCAGCTTTGAGTCCATTGAGTGAAACACTTTGGagagaaaaagcaaaaacagAGTTCATAGTTGGTGATGTATCAGCAAGATTAACATGGAAAGATTTAACTGTTATGGTAACATTAAGCAATGGTGAAACACAAAATGTTTTGGAGAATTTAACTGGTTATGCTGAACCAGGTTATTTTACTGCTCTTATGGGTCCTTCTGGTTCTGGAAAATCAACACTTCTTGATGCACTTTCTAGTCGTTTAGCTTCTAATGCTTTTCAATCTGGTACTGTTCTTCTTAATGGTCGCAAAGAAAAGTTATCTTTTGGAACTGCTgcaTATGTAACACAAGATGATAACTTGATTGGAACATTAACAGTAAGAGAAACAATTTGGTATTCAGCTAGATTAAGATTACCAGATAAAATGTCAAGATCAGATAAAAGAGCATTAGTTGAAAGCACAATTGTTGCAATGGGACTTCAAGATTGTGCTGACACAGTTATTGGTAATTGGCATTTACGTGGTATAAGTGGTGGTGAAAAAAGAAGAGTTAGTATTGCATTGGAAATATTAATGAGACCTAGATTGCTTTTTCTTGATGAACCAACTAGTGGACTTGACAGTGCATCAGCTTTCTTTGTGACACAAACACTACGTGCATTGGCAAGGGATGGAAGAACAGTGATAGCTTCAATTCATCAACCTAGCAGTGAAGTTTTTGAACTATTTGATCAATTGTACTTGCTTTCTGGTGGCAAAACTGTTTATTTTGGCCAAGCTTCAGATGCATATGAGTTCTTTGCACAAGCTGGATTTCCATGCCCTGCTCTGAGAAACCCTTCTGATCATTTCCTCAGATGCATCAATTCTGACTTTGATAAAGTCAAAGCCACTCTTAAAGGGTCAATGAAATTAAGGTTTGAGGGAAGTGATGATCCTCTGGACAAGATCACCACTGCTGAAGCTATCAGAACACTTGTAGATTTCTACCGCACTTCTCAGCACTCTTACGCTGCAAGACAAAAAGTTGATGAGATGTCCAACGTTAAAGGGACAGTGCTTGAAGCAGGAGGAAGTGAAGCTAGTTTCTTGTTGCAATGTTACATATTAACCAAACGTTCATTCATTAACATGTCAAGGGACTTTGGTTACTATTGGCTTAGGCTTGTTATCTACATTGTTGTCACTATATGCATTGGAACAATTTACTTGAATGTTGGGACTGGCTATAACTCAATTCTGGCTAGAGGTTCATGTGCATCTTTTGTCTTTGGTTTTGTCACATTCATGTCAATTGGTGGATTTCCTTCATTTGTTGAAGATATGAAGGTTTTTCAAAGGGAGAGACTAAATGGACACTATGGTGTGACTGCATTTGTTATAAGCAACACATTATCAGCAACACCATTTCTGATATTAATCACTTTTCTCTCTGGAACAATTTGTTACTTCATGGTTCAACTACACCCTGGCTTTTCACATTATGTTTTCTTTGTGCTCTGCCTTTATGCAAGTGTCACTGTTGTTGAAAGCTTAATGATGGCAATTGCTAGTATTGTTCCTAACTTCCTCATGGGAATTATCATTGGAGCAGGAATTCAAGGAATATTCATGTTAGTCTCTGGCTACTTTAGGCTCCCACATGATATCCCAAAGCCTGTTTGGCGCTATCCAATGTCATACATCAGTTTCCACTTTTGGGCTTTACAGgGTCAATACCAAAACGATCTAAGGGGTTTGGTGTTCGACAATCAAACACCAGATCTTCCTAAGATACCTGGCGAATACATCTTGGAGTATGTGTTCCAAATCACCGTGACTAGATCAAAATGGATAGATTTAACCGTGATCTTAAGCATGATCGTCATATATCGCAttattttcttcatcatgaTCAAAATCAATGAGGATGTTACTCCTTGGATTAGAGGCTATCTTGCTAGAAGAAGAATGCAACAAAAAAGTGGTGATACAACAATTGCACCTGATGTTCTCACTCAATCTCCATCTTTGAGAAACTATATTTCCAATCAAAAGTAG 2091 0.3682 MEIEPSYNNKPTTLGNEVATNLPALSPLSETLWREKAKTEFIVGDVSARLTWKDLTVMVTLSNGETQNVLENLTGYAEPGYFTALMGPSGSGKSTLLDALSSRLASNAFQSGTVLLNGRKEKLSFGTAAYVTQDDNLIGTLTVRETIWYSARLRLPDKMSRSDKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDKITTAEAIRTLVDFYRTSQHSYAARQKVDEMSNVKGTVLEAGGSEASFLLQCYILTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSATPFLILITFLSGTICYFMVQLHPGFSHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLVFDNQTPDLPKIPGEYILEYVFQITVTRSKWIDLTVILSMIVIYRIIFFIMIKINEDVTPWIRGYLARRRMQQKSGDTTIAPDVLTQSPSLRNYISNQK 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03411 696 CDD ABCG_EPDR 47 275 - -
Tsu06g03411 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 50 293 IPR003439 GO:0005524
Tsu06g03411 696 SMART AAA_5 79 250 IPR003593 -
Tsu06g03411 696 Gene3D - 44 288 IPR027417 -
Tsu06g03411 696 PANTHER OS04G0528300 PROTEIN 23 693 - -
Tsu06g03411 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 286 IPR027417 -
Tsu06g03411 696 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 23 693 - -
Tsu06g03411 696 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524
Tsu06g03411 696 Pfam ABC-2 type transporter 383 589 IPR013525 GO:0016020|GO:0140359
Tsu06g03411 696 Pfam ABC transporter 70 221 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03411 Tsu-Chr6 45121942 45130633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03411 68 254 Calmodulin-binding Proteins AT2G36910 33.333 4.41e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03411 K05681 - gmx:100816389 1238.02