Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03406 ATGGTTCTTCAAAACGATATTGATTTGTTGAATCCACCTGCTGAACTCGAAAAGAGGAAGCACAAACTCAAACGACTTGTTCCATCCCCTAATTCCTTCTTCATGGATGTCAAATGCGCAGGTTGCTTTAACATAACAACTGTATTCAGTCACTCCCAAACTGTTGTTATTTGCGGTAACTGTCAACAGGTGTTGTGTCAACCAACTGGTGGTAAAGCAAGACTTACAGAGGGATGCTCTTTCAGGAAGAAGGGAGATTAG 261 0.4176 MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSFFMDVKCAGCFNITTVFSHSQTVVICGNCQQVLCQPTGGKARLTEGCSFRKKGD 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03406 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Tsu06g03406 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Tsu06g03406 86 PANTHER 40S RIBOSOMAL PROTEIN S27 2 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
Tsu06g03406 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Tsu06g03406 86 Gene3D - 5 85 IPR023407 -
Tsu06g03406 86 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 85 - -
Tsu06g03406 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03406 Tsu-Chr6 45049807 45051029 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03406 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 91.860 2.99e-57 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03406 K02978 - minc:123230388 168.703