Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03383 ATGGACTTCTGGGATCGGCTCTGCAAGACACTTGGAGTCAGAAAAGTTAGTGTGATGGATGTTTCAAAGAAATATGGACTGGAGTACCGGCTGATCCATGCCATCACTAGGGGTCATTCTTGGTATGGTGAATGGGGTTATCGATTTGGCTCTGGTAGCTATGGTCTCACAGAGGAAGCTTATAAGATTGCTGTTGAAAGCCTGTCCAACTTACCCTTATCCATCTTCCTCTCCCACGACCAGAAGCCCTACTCTTGTGTGCAGGGCATCATTTCACATTACCAGTCTTTGTCGGAACATCAGCTTGTAAATATAAGAGACCTGTTCAGTCTTCTGATGAGTTTGATTCATGATGTTGCCAAGACTTCATCAAAGGTTGGTGACATCACCGGCAAGAAGCGCAGCTTTGATGCCATAGGAGTGTCATGTTCTTGGGAGGAGAGTGATGTGGTACGTGTTGAGGAAGCCATTGTCAAAGTGCTGCGTGCTGTGTCCCCGTCCAATTGGGTGAGCTGGCGTGCTCTTAGGGGTTCTGTCTATAAGGTGGCCTCTGCAGAGCTGCTTGATTACTGCCTTGGAGAACTGGGAGGAAAAGTGGTATTGGGTTCAATGATTGTTAATACCCGACCCAATCCTGGGACCGGAACATTTGAGTTCAGACTTGAGGGTGCAAACAGTTCTTGTGACGGAAAAACATCAAATAATTATTCTTCAGGCTCAAAGTGTCTATCTAAAGAGAACCTCCTATAtgacttgaaatatttatatggGTATTTGCTTAACTCTCAGATGATGCAGAACTATGTCCCCGAGGGAAAAAGAACTCCTGTAATGAACTCAGCTCAGAAGCTTCTCAACTGTAAGCAGTTAGTTAAAGATTATAGTCCGGAGATGTTGCCAATTACAGATTTGTATAAAATACGCCTCTCATGTCAAGTGGAACTTACAGACGAATCTGAAAATCCCACAATCCCAACAGAATTGGTTGTCTTACCAATAAATGCAACAGTATCTGACCTTAAAACCGAAGCAGCAAATGCTTTTCAAGATGTATATCTAATGTTCAGAAGATTTGTAGTTGATGAGCTAGTTGGCTATAGCAGTGTAGATGATTCCACTCAGGTCAAGCTCTTGTTAGGATCAGCAGAAGCAGTTTGTGTCCGAGGAGAATGCACTGGGAAGAACGGATTGAGCATGTTTAGAATGGAACGGGGAATTGAGAGGTGGACTGTGGATTGCAGCTGTGGGGCTAAGGATGATGATGGGGAGAGAATGTTGGCTTGTGATAAATGTGGAGTGTGGCGGCATACTATATGTTCCGACATTCATGATACACAACCTGTTCCCACTCATTTTGTTTGTCTAAAATGCCAAAACACTGACTTGAAACTTAAATCAGTTGGGAATTGCAAAGAAACTCTGACCAACATTAGTGGTAGTAGCAGTTGCTTTAAAAAGGGGTTACCAGTGCCTTCTGATGTTCACTAA 1488 0.4321 MDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLIHAITRGHSWYGEWGYRFGSGSYGLTEEAYKIAVESLSNLPLSIFLSHDQKPYSCVQGIISHYQSLSEHQLVNIRDLFSLLMSLIHDVAKTSSKVGDITGKKRSFDAIGVSCSWEESDVVRVEEAIVKVLRAVSPSNWVSWRALRGSVYKVASAELLDYCLGELGGKVVLGSMIVNTRPNPGTGTFEFRLEGANSSCDGKTSNNYSSGSKCLSKENLLYDLKYLYGYLLNSQMMQNYVPEGKRTPVMNSAQKLLNCKQLVKDYSPEMLPITDLYKIRLSCQVELTDESENPTIPTELVVLPINATVSDLKTEAANAFQDVYLMFRRFVVDELVGYSSVDDSTQVKLLLGSAEAVCVRGECTGKNGLSMFRMERGIERWTVDCSCGAKDDDGERMLACDKCGVWRHTICSDIHDTQPVPTHFVCLKCQNTDLKLKSVGNCKETLTNISGSSSCFKKGLPVPSDVH 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03383 495 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 465 - -
Tsu06g03383 495 PANTHER OS01G0877500 PROTEIN 1 465 - -
Tsu06g03383 495 SMART PHD_3 412 458 IPR001965 -
Tsu06g03383 495 SUPERFAMILY FYVE/PHD zinc finger 404 460 IPR011011 -
Tsu06g03383 495 Pfam PHD-finger 413 459 IPR019787 -
Tsu06g03383 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 463 IPR013083 -
Tsu06g03383 495 CDD PHD_MMD1_like 412 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03383 Tsu-Chr6 44762062 44768007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03383 1 457 PHD Transcription Factor Family AT5G22260 27.835 8.51e-62 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu06g03383 PHD 5.5e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03383 - - lja:Lj5g3v1222610.2 696.427