Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03379 ATGGAAAATATTGAAGCAAAGTCGCAAAATTTAGCTAATTTCAAAGTTGGGTCTTTgccaactttattttatatCCCTAACTTCATCACAGATACTGATCAAACCCTTCTTCTCAATAATATTAATGGAGCTCCTTCATCAAAGTGGAAGTTGTTGAAGAATAGAAGGCTTCAGAATTGGGGTGGTGTTGTTCATGAGAAGGGACTTCTGCCTCAAGCTTTGCCTCCATGGTTGGCAAATTTCACACAAAAAATATGTGAAGAATCAGGACTATTCCCATCACCAATCAATCATGTTCTCATAAATGAATACCAACCTAACCAAGGCATAATGCCACACCAGGATGGACCTTCCTATTTTCCAGTTGTAGCTATTCTATCACTTGGATCTCCTGTTGTCATGGACTTCACTCCCCATGCAAGATTAAAACTGGATTCACAAGAAGTTATTGACAAAGAATCAGACGGAGAAACTATTGAGACTGGGAAAGAAAAGTGGCTTGATGATCACCATCCATTCTCTATTATATTGATGCCTCGCAGTTTATTGATATTCAAGGATAAGGCATACTCAGATTACTTGCATGGTATAAAAGATTGTGCTGTACATGGCTATGATGGGGCTGTAAATGAAATTGAAGCTTTGAAACACAATGAATCAGATAGACATCTATTTGGCTCAGAGGATATGGTGGAAACAATAGGAAAAGAAGAGTATAAGAATATATCAAGAACTTCCAATAGAATTTCATTGACTTGCAGATTGGTTCCAAAAGTTCACAAGAATTTGTTTAGACGTGAATCCACTGGTTCCCTTAACTGTTGTCGCCAGCTGTTGTTCTCACCCTCCTCGCCCGGTTCCCATGTGTTTCTTCTTTATGTTTCTGTTGCCTCCATCGTGCCGTTTCATTCGTACACTCACTACTTAACCATCCTTTTCCCATttcatttctcttcttttcaatttcaatttcaattcaattcaacacCGTTTCTTTCagGCGGAGTATGCTTGTCGGATTCCATCATGAAAAAGAATTCTGAGCAGAATCGTTTTGGATCTGTATTCACCAAGCTCTTGAACCAGCTTGGGGAACCTGTTGACTTTGAACTTCCAGAATGGGTTAAGATCAGAACAACACAGTACACCCATATTAAGCGCAATATATATCTCACCAAGAAGAACAAGAGAAAGTTCGATGATGGCATATTCTGTTCCTGCGAACCATCTTCTGAATCTACTGGTGTATGTGGCAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCTTCAGCCTGCAAATGTGGGACCTCGTGTCTCAACAAAGCTTTTCAGAATCGTCCTGTGAAAAAGATGAAGTTGGTTAAGACTGAAAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAACCTTGGGGAGTTTGTCATTGAATATGTTGGAGAAGTCATCGATGACAAAACATGTGAACAGAGGCTTTGGAATATGAAAGATCGTGGGGAAACAAACTTTTACTTATGTGAAATCACTCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCGAGATATATCAATCATAGCTGCTCCCCGAATACTGAGATGCAGAAATGgataatagatggtgaaacCAGAATTGGCATATTTGCAACTCGTGACATACAGAAGGGCGAGCATCTGACTTATGACTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGCGCTGTTCAGTGTAGGCGTAAACTGGGTGCGCGCCCTACCAAGCCTAAAGTGTCTTCAGATGCTGCATTAAAATTTGTTGCATATCAGGTTTGTCAGAATGGAGGCATGCAAGGTGTGCATATTGGAAGTTCTCGGATTTTTGATCAATCAAAATGCTTACACAATTGCATTGATGAAGTAATTATGATAAAACAACTTGGAAATGTGAGATTTGGGATTATTAAATGGTTTGACGAATATTCCCGAAAACACAAGATCTTGTTTGAGGATGGTTGTGTTGAAATTTGTGACATGTCAAAAGAAGATTGGGAACTAGTGAGATTGTGA 2070 0.3836 MENIEAKSQNLANFKVGSLPTLFYIPNFITDTDQTLLLNNINGAPSSKWKLLKNRRLQNWGGVVHEKGLLPQALPPWLANFTQKICEESGLFPSPINHVLINEYQPNQGIMPHQDGPSYFPVVAILSLGSPVVMDFTPHARLKLDSQEVIDKESDGETIETGKEKWLDDHHPFSIILMPRSLLIFKDKAYSDYLHGIKDCAVHGYDGAVNEIEALKHNESDRHLFGSEDMVETIGKEEYKNISRTSNRISLTCRLVPKVHKNLFRRESTGSLNCCRQLLFSPSSPGSHVFLLYVSVASIVPFHSYTHYLTILFPFHFSSFQFQFQFNSTPFLSGGVCLSDSIMKKNSEQNRFGSVFTKLLNQLGEPVDFELPEWVKIRTTQYTHIKRNIYLTKKNKRKFDDGIFCSCEPSSESTGVCGRDCHCGMLLSSCSSACKCGTSCLNKAFQNRPVKKMKLVKTEKCGSGIVADEDINLGEFVIEYVGEVIDDKTCEQRLWNMKDRGETNFYLCEITRDMVIDATYKGNKSRYINHSCSPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAVQCRRKLGARPTKPKVSSDAALKFVAYQVCQNGGMQGVHIGSSRIFDQSKCLHNCIDEVIMIKQLGNVRFGIIKWFDEYSRKHKILFEDGCVEICDMSKEDWELVRL 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03379 689 CDD SET_ASHR3-like 452 590 - -
Tsu06g03379 689 Gene3D - 10 262 IPR037151 -
Tsu06g03379 689 Pfam 2OG-Fe(II) oxygenase superfamily 59 254 IPR027450 -
Tsu06g03379 689 SUPERFAMILY Clavaminate synthase-like 20 257 - -
Tsu06g03379 689 ProSiteProfiles AWS domain profile. 400 449 IPR006560 GO:0005634|GO:0018024
Tsu06g03379 689 Gene3D SET domain 368 605 IPR046341 -
Tsu06g03379 689 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 95 257 IPR005123 -
Tsu06g03379 689 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3 348 687 - -
Tsu06g03379 689 Pfam SET domain 462 567 IPR001214 GO:0005515
Tsu06g03379 689 SMART set_7 451 574 IPR001214 GO:0005515
Tsu06g03379 689 PANTHER SET DOMAIN PROTEINS 348 687 - -
Tsu06g03379 689 ProSiteProfiles Post-SET domain profile. 574 590 IPR003616 -
Tsu06g03379 689 SUPERFAMILY SET domain 377 580 IPR046341 -
Tsu06g03379 689 SMART PostSET_3 574 590 IPR003616 -
Tsu06g03379 689 ProSiteProfiles SET domain profile. 451 568 IPR001214 GO:0005515
Tsu06g03379 689 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 376 632 IPR025787 -
Tsu06g03379 689 SMART shorttest3 400 450 IPR006560 GO:0005634|GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03379 Tsu-Chr6 44699086 44719778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03379 424 586 C2H2 Transcription Factor Family AT2G23740 35.519 1.92e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu06g03379 2OG-FeII_Oxy_2 1.9e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03379 - - gmx:100808183 604.364