Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03342 ATGGAGTGCAATAAGGACGAGGCTATCAGAGCTAAAGAAATTGCTGAGAGGAAGTTCATTGCAAAGGACATATCGGGAGCAAAGAGGTTTGCTTTGAAAGCCCAAAATTTATTTCCTTCCCTTGAGGGTATTCCTCAAATGATAGCAAAACTTGACGTGTATATTTCTGCTGAGAATAAAGTGAAAGGAGAAGCAGATTGGTATGGTATACTTGGTGTGGACCCGTGTGCCGACGATGATACGGTTAGGAAACATTATAGGAAGCTAGCTCTCATGCTTCACCCAGACAAGAACAAGTCCGTCGGAGCCGATGGGGCCTTTAAACATGTTTCAGAGGCGTGGAGTTTACTGTCCGATAAGGCAAGAAGGGCAGCTTATGATGAAAAGATAAATGCAAAAGCACAGAAAGGCTCAACTATTTTTGGCGGTTCATCAGCAAAAGCGGCGGCAAATGGGGCCAAGAATAGTAAAAAGAAACCCCCTTCAAATTCAAGGACTCAGAAAAAGACTGCTAAAGAGCAATCTACATCTTCTACTAATAAATCAACATCCACATTTTGGACTACTTGCCGTGGGTGTCAAATGCATTACGAGTATCACCGAATGTATCTGAACCTGAAACTCGCCTGTCCTAGCTGTCATGAAGCCTTTTTGGCGTTAGAAACTAATCCGCCACCTGCTAGTGGTATCATACCTGGGGCTCCGTTGAATTTTAAGCCAAAGCCTAATCACCAAGGACCTCATAAAAGCAAATCTAATGCTGGAAAGAACAACATGGCAGCTCCAAATGTTGGAGCAGGGTCTACCAAGAATAGTTTCCAGTGGGCTCCATTCTCGAATTCTGGTGTTTCTAATGTGGCTCAAGCTGCAAATGTGGTTCAGCAGCCTTATCATAAGGTGAATCGAGATCGTGAGGAGGCACAAGCTGCTAACTTAGGGAGTGGTATGAAGAAATTCGCAGTTGAACTCTCCCCAGTGGAACTTCAGAATCTTCTTGTTGAAAAAGCTAGAAAAGAAATTCGCAAGAAACTCAACGAGTTTCAGTCAAATACTGTTGATAAATCAGTGGCGTAA 1074 0.433 MECNKDEAIRAKEIAERKFIAKDISGAKRFALKAQNLFPSLEGIPQMIAKLDVYISAENKVKGEADWYGILGVDPCADDDTVRKHYRKLALMLHPDKNKSVGADGAFKHVSEAWSLLSDKARRAAYDEKINAKAQKGSTIFGGSSAKAAANGAKNSKKKPPSNSRTQKKTAKEQSTSSTNKSTSTFWTTCRGCQMHYEYHRMYLNLKLACPSCHEAFLALETNPPPASGIIPGAPLNFKPKPNHQGPHKSKSNAGKNNMAAPNVGAGSTKNSFQWAPFSNSGVSNVAQAANVVQQPYHKVNRDREEAQAANLGSGMKKFAVELSPVELQNLLVEKARKEIRKKLNEFQSNTVDKSVA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03342 357 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Tsu06g03342 357 Pfam DnaJ domain 66 127 IPR001623 -
Tsu06g03342 357 Gene3D DnaJ domain 63 192 IPR036869 -
Tsu06g03342 357 SMART dnaj_3 65 122 IPR001623 -
Tsu06g03342 357 PRINTS DnaJ domain signature 102 122 IPR001623 -
Tsu06g03342 357 PRINTS DnaJ domain signature 68 86 IPR001623 -
Tsu06g03342 357 PRINTS DnaJ domain signature 86 101 IPR001623 -
Tsu06g03342 357 MobiDBLite consensus disorder prediction 247 266 - -
Tsu06g03342 357 Coils Coil 326 346 - -
Tsu06g03342 357 PANTHER BNAC03G44070D PROTEIN 1 354 - -
Tsu06g03342 357 MobiDBLite consensus disorder prediction 143 184 - -
Tsu06g03342 357 CDD DnaJ 66 119 IPR001623 -
Tsu06g03342 357 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Tsu06g03342 357 PANTHER BNAA04G14940D PROTEIN 1 354 - -
Tsu06g03342 357 MobiDBLite consensus disorder prediction 143 160 - -
Tsu06g03342 357 MobiDBLite consensus disorder prediction 167 184 - -
Tsu06g03342 357 MobiDBLite consensus disorder prediction 240 266 - -
Tsu06g03342 357 SUPERFAMILY Chaperone J-domain 58 126 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03342 Tsu-Chr6 44412182 44413505 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03342 4 233 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.322 1.80e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03342 - - lja:Lj2g3v0520120.1 419.083