Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03306 ATGCCATCTCCAGCGAATGCTGCGTCGGCGACGCCTGATAGTACAGAGGGAAAGAAAAAGAGGTATAGGGCTGGGCAGTATGAATCGGACAGTAAGGCAATGCTGTCGTCTATGTCGATTTTGTTAGGAACTCCATTGACTGAAGATTTTCCAGCCTCAAAAAGGGGTCGAGGGTTGTATAATTTTAAAGATGATGGAATTTCAAGTTCCCGTGGTTCCCATTTAACACATCGGAACTTCACAGTGAATTCTGGCGAGGATATCGCCAAAAAAATTTGCTTTCTTGCACTACAATTCCGTGCGATATGCATTATCTCTGGACATGGCACTATTTCAAGCTTCACACTTCGTTCTCCTGGCGGGACTTCTAAATATGAGGGAATTTTTGAACTGCTTTCTTTGACGGGCTACTTTTTGCCAAGTAATGCTGCCATTTATAGAAGATCTGGTGTGGTGGCTGTCTCTTTGGCTTTTCGAGATGGTCGAACTATTGGGGGTCAACTGGCTGGTCCACTGGTAGCTGCAGGTCCTGTACAGGTTGTGGTATATAGTTTTCGTCCTAACATGCCTCGTAAGCCGCGGGAGCAGAAGAAAGACAAGGGGGAGCAGAAGAAAGGGAAGGAGATTGCAGATCATACCAAGGAGGAGCAGAAGAAAGGCTCTAGGAACTAA 672 0.4598 MPSPANAASATPDSTEGKKKRYRAGQYESDSKAMLSSMSILLGTPLTEDFPASKRGRGLYNFKDDGISSSRGSHLTHRNFTVNSGEDIAKKICFLALQFRAICIISGHGTISSFTLRSPGGTSKYEGIFELLSLTGYFLPSNAAIYRRSGVVAVSLAFRDGRTIGGQLAGPLVAAGPVQVVVYSFRPNMPRKPREQKKDKGEQKKGKEIADHTKEEQKKGSRN 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03306 223 CDD DUF296 80 185 IPR005175 -
Tsu06g03306 223 ProSiteProfiles PPC domain profile profile. 72 206 IPR005175 -
Tsu06g03306 223 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 192 - -
Tsu06g03306 223 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 9 205 - -
Tsu06g03306 223 Gene3D - 79 203 - -
Tsu06g03306 223 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 205 IPR039605 GO:0003680
Tsu06g03306 223 MobiDBLite consensus disorder prediction 186 223 - -
Tsu06g03306 223 Coils Coil 218 223 - -
Tsu06g03306 223 MobiDBLite consensus disorder prediction 1 28 - -
Tsu06g03306 223 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 185 IPR005175 -
Tsu06g03306 223 MobiDBLite consensus disorder prediction 190 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03306 Tsu-Chr6 43868951 43872789 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03306 18 185 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 41.837 4.43e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03306 - - mtr:MTR_6g060670 184.496