Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03301 ATGGTTGATGTTCATCATACTGATAAGCTCAAGAAATCTGAAGACAAGTTTGGATTTATCGTCATAAATCGCAATGGCACTGTGTTTGGGACCTTGAAGGGTAATACAAGAGAAGTGCTTTACAAGTTACATGTGGATCTTCGAGATGGAAGAGGAAGGGAACCAGTCCTACTGTTTTCCCGTGCTCGTATGGAGAAACGTCTTAACCATGTGAAGAAGACTGCCGAGCTTGCAACACTGCTGTATATCAATCCTGCTACCAGTCAGCCTAATGTCTCTGGATTAATACTTGCTGGTCCTGATGATTATTACAAAACTGCGCTGATTGAATCAGATATGTTTAATCCCCTTCTTAAGGCAAATATACTTGGTGTTGTAGATGTATCTAAATCCTATGTAGGGGATTATGGATTTAACGAGGCTATTGAACTATCTTCTGAAATTTTGTCCAAAGCAAAGTTTACTCAGGAGAAATGTTTGAGTGAATAA 489 0.3926 MVDVHHTDKLKKSEDKFGFIVINRNGTVFGTLKGNTREVLYKLHVDLRDGRGREPVLLFSRARMEKRLNHVKKTAELATLLYINPATSQPNVSGLILAGPDDYYKTALIESDMFNPLLKANILGVVDVSKSYVGDYGFNEAIELSSEILSKAKFTQEKCLSE 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03301 162 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 8 160 IPR004403 GO:0003747|GO:0006415
Tsu06g03301 162 Gene3D eRF1 domain 2 14 151 IPR042226 -
Tsu06g03301 162 SUPERFAMILY Translational machinery components 15 149 - -
Tsu06g03301 162 Pfam eRF1 domain 2 16 150 IPR005141 -
Tsu06g03301 162 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 8 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03301 Tsu-Chr6 43844660 43845148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03301 6 160 Eukaryotic Initiation Factors Gene Family AT5G47880 65.000 4.51e-60 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03301 K03265 - mtr:MTR_4g103730 219.935