Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03295 ATGACGTTCTCAAAAGGTACAATTGGAATTTTCAATCAAGTAACCGAACTCTCAATTTCATGCAATGCAAAAACTGCACTCATTGTCACATCTCCCAACAACGAGCTCTATACATGTGGCTATCCTAATTGTGACGCCGTCATTCAACCATTTTTGACCGGCAAAGACACCATTGAAGACAATGAGAAAAAGAAGCAAGAGGAGGTTGTTGAAACCCTAAGGCTTGAATATGAGGCAATTGGAGATGAACTTGAGAAACTTACAGAAGAAGAAATGAATTTTCAAGCAATCAATGATGAGGCAACAAAGAGTGGTTCTATTTTCTCTTGTTGGTGGAATGATCCTATTGATGATATGAATTTACAATCTGTTGAGGAATTTAAGACTTCTTTAGAAAAATTGAGACTTAATTTAGATTGA 420 0.3619 MTFSKGTIGIFNQVTELSISCNAKTALIVTSPNNELYTCGYPNCDAVIQPFLTGKDTIEDNEKKKQEEVVETLRLEYEAIGDELEKLTEEEMNFQAINDEATKSGSIFSCWWNDPIDDMNLQSVEEFKTSLEKLRLNLD 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03295 139 PANTHER MADS BOX PROTEIN 2 139 - -
Tsu06g03295 139 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 139 - -
Tsu06g03295 139 SUPERFAMILY SRF-like 2 52 IPR036879 GO:0003677|GO:0046983
Tsu06g03295 139 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 38 IPR002100 GO:0003677|GO:0046983
Tsu06g03295 139 Coils Coil 63 90 - -
Tsu06g03295 139 Gene3D - 1 78 IPR036879 GO:0003677|GO:0046983
Tsu06g03295 139 ProSiteProfiles MADS-box domain profile. 1 43 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03295 Tsu-Chr6 43820683 43821102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03295 1 135 Type I MADS-box Gene Family AT5G60440 26.950 2.23e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu06g03295 SRF-TF 8.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03295 - K25392 cam:101507050 151.369