Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03290 ATGGCCACAGAAGAACCCATTGTTGCGGTGGAACCTATTCCCGAACCACCAGCCTCGGAGAAAGAAGAACCAAAGAAAGCTTCCAAACCTAAGAAAGCTTCCAAACCACGAAGCCCTGCTTCTCATCCTTCTTACGAAGAGATGATTAAGGATGCAATTGTGAGTCTGAAAGAGCGAACAGGTTCAAGCCAATATGCGATTGCGAAATTCATTGAAGAGAAACACAAACAACTTCCTTCAAATTTCAAGAAGCTATTGCTTcagaatttgaagaagaatGTTGCTTCTGGAAAGCTTGTTAAAGTTAAAGGTTCATTCAAGCTTTCTTCGAATATGAAACCATCATCGGTGACAACAGAGGCGAAGAAAAAGCCTACAGCAGCGAAGCCGAAGACAAAGCCAACTGCTGCGAAGGCTAAGCCCAAAGCTGCTGCTGCAAAGCCCAAAGCTGCTGTTGTTAAGTCCAAAGTTGCTGCTGCAAAGCCCAAAGCTGCTGTTGTTAAGTCCAAAGTTGCTGCTGCAAAGCCCAAGGCAGGTGTGAAAGCGAAGCCTAAGGAGAAGTCTGCTAAGGTTGCAAGGACATCGACGAGGACTTCACCGGGGAAGAAAGTTGTTACTGCAAAGGCAGTACCGAAGAAGGTTGTGGCTGCGAAGAAAGTTCATGTGAAAAGTGTGAAACCTAAAAGCGTAAAGTCTCCGGCGAAGAAGGTTTCGGTGAAGAGAGGGGGAAGAAAATGA 738 0.4499 MATEEPIVAVEPIPEPPASEKEEPKKASKPKKASKPRSPASHPSYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLSSNMKPSSVTTEAKKKPTAAKPKTKPTAAKAKPKAAAAKPKAAVVKSKVAAAKPKAAVVKSKVAAAKPKAGVKAKPKEKSAKVARTSTRTSPGKKVVTAKAVPKKVVAAKKVHVKSVKPKSVKSPAKKVSVKRGGRK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03290 245 SUPERFAMILY "Winged helix" DNA-binding domain 38 116 IPR036390 -
Tsu06g03290 245 SMART h15plus2 39 105 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu06g03290 245 MobiDBLite consensus disorder prediction 214 245 - -
Tsu06g03290 245 MobiDBLite consensus disorder prediction 175 245 - -
Tsu06g03290 245 CDD H15 39 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu06g03290 245 MobiDBLite consensus disorder prediction 1 46 - -
Tsu06g03290 245 PANTHER HISTONE H1 4 245 - -
Tsu06g03290 245 Gene3D - 37 116 IPR036388 -
Tsu06g03290 245 MobiDBLite consensus disorder prediction 109 149 - -
Tsu06g03290 245 Pfam linker histone H1 and H5 family 42 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu06g03290 245 PANTHER HISTONE H1.1 4 245 - -
Tsu06g03290 245 PRINTS Histone H5 signature 28 49 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu06g03290 245 PRINTS Histone H5 signature 55 72 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu06g03290 245 PRINTS Histone H5 signature 137 151 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu06g03290 245 PRINTS Histone H5 signature 175 192 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu06g03290 245 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 41 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03290 Tsu-Chr6 43782462 43783586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03290 38 178 Single Myb Histone (SMH) Gene Family AT1G17520 27.660 6.11e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03290 K11275 - zju:107425932 129.413