Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03284 ATGCTTTACTATGTTCTCACAACAGGCTCTGGACAACAAACACTTGGTGAAGAATACTGTGATATCACTCAGGTTGCAGGAACTTATGGACTTCCTCCTACACCGGCCAGGCGTGCTTTGTTCATTGTATACCAATCGGCGATTCCATACATTGCAGAGAGAATTAGTTCTAGAATTGCTTCCCGGGGAATTATCCTTGCTGACTACGAGTCTGCTGAGAGTTATTATGGTGAAAATGCTCGCGGGAATAGTAGTTCTCGGGTTTATGCCACAAGTGAACTTTCTACTCCGTCTACCTCAGGGCAGTCTACTTCAACTCTGACGAGGTTGAAGGAGAAAGTCGGGGGATTTTGGTTGCATATGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGTGAGTTATTGCAGTTGCTTCTGCGTGCTAACCTCATGTTGTTTTACTTTGAAGgtCTTTATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATTGGAAAAGCGTCAAATCAAAGACCCAGATATCAAATACTGGGAGTATTTCTCTTGATTCAGCTTTGTGTAATAGCTGCTGAAGCGCTGCGTCGAAGAAATTTTACATCAATTGCTGGTTCAGTTCATCAGGCATCCTTTGCAACCGACCATACATCAGCAGGACATGGTTTGCCTGTTCTAAATGAAGAAGGTAATTTGGCATCTCCAGAAGCTGATAATGGAAGTTGGGTCTCTGGATCTTCATCTTCTGAGcATCATGCATCTAGTGGGGTTAGCAAATGCACACTTTGCCTGAGTAATCGTCAACACCCAACAGCTACTTCTTGTGGCCATGTATTTTGCTGGAACTGTATCACCGAATGGTGCAACGAAAAACCAGAGTGCCCTCTTTGCCGCACCCCTATAACTCACTCGAGTCTAGTTTGTATTTATCATTCAGACTTCTAG 951 0.4374 MLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQSAIPYIAERISSRIASRGIILADYESAESYYGENARGNSSSRVYATSELSTPSTSGQSTSTLTRLKEKVGGFWLHMVQRWPTMLPFVRELLQLLLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEALRRRNFTSIAGSVHQASFATDHTSAGHGLPVLNEEGNLASPEADNGSWVSGSSSSEHHASSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCIYHSDF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03284 316 Pfam Zinc finger, C3HC4 type (RING finger) 261 305 - -
Tsu06g03284 316 PANTHER PEROXISOME BIOGENESIS FACTOR 10 1 313 - -
Tsu06g03284 316 SUPERFAMILY RING/U-box 261 305 - -
Tsu06g03284 316 CDD RING-HC_PEX10 261 300 - -
Tsu06g03284 316 ProSiteProfiles Zinc finger RING-type profile. 262 300 IPR001841 -
Tsu06g03284 316 SMART ring_2 262 299 IPR001841 -
Tsu06g03284 316 ProSitePatterns Zinc finger RING-type signature. 277 286 IPR017907 -
Tsu06g03284 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 313 IPR013083 -
Tsu06g03284 316 Pfam Pex2 / Pex12 amino terminal region 1 199 IPR006845 -
Tsu06g03284 316 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03284 Tsu-Chr6 43708520 43713115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03284 256 312 C3H Transcription Factor Family AT4G28270 34.247 1.46e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03284 K13346 - gmx:100783914 523.472