Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03266 ATGCCTTCACTACCAATAACTAACGACGCCGTTTCAATGGAAAGCCctaaacaaaaatcaattaagaagaagaaggaaaagctTCAAAACGACATCGTTATGGAGGAAGAATCAGTGAAGAAGAGTTCTAAGAAGAGGAAGAAAGGttcagatgatgatgaagaagttAAGAGTGGAACTAGCTCTGATGAAGGTTCTAGAATGAAAgtgaagaaggagaaaaagaagaagaaatcgaaggttgaagaagttgaagaaGTTGTTGTGAAGAAGGATGATCCGAATGCGGTTTCGAATTTTAGAATTTCTGAACCGTTGAAGATGAAATTGAAGGAAAACGGAATTGAAGCTTTGTTTCCGATTCAAGCTATGACTTTTAATACCATTCTTGATGGTTCTGATTTGGTTGGTCGTGCTCGTACTGGTCAGGGAAAAACTCTGGCATTTGTGTTGCCCATATTAGAGTCATTGACAAATGGTCCAGCTAAATCGGTTAGAAAGACTGGTTATGGGAGGGTCCCAAGTGTACTCGTGCTTTTACCTACTAGGGAATTGGCCAATCAGGTGTATTCTGACTTTGAAGTTTATGGTTCGTCTCTGGGATTGTCTGCTTGCGCTGTATATGGTGGAGCTCCGTATGGACCTCAGGAGAATAAGCTAAGGAGAGGTGTTGATATCGTTATTGGAACACCAGGTCGTATTAAGgatCATATTGAGAAGGGAAATATTGACCTGAGCCACCTAAAGTTCCGTGTCCTTGATGAGGCAGATGAGATGTTGAGGATGggttttgttgatgatgttgaactCATTCTAGGTAAGGTACAAGATGTTACTAAAGTACAGACCCTTCTTTTCAGTGCTACTTTGCCAAGCTGGGTTAAGCAAATTTCTACAAAATTTCTGAAAGCCGATAAGAAAACTACTGATCTTGTCGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTATCCTTCCATGTAATCATACTGCTATGGCACAGCTTATCCCTGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTGCGGAGAAAAAGGAGTCTGCTTCTGAGCTTGCTGGATTGTTACCTGGTGCGAGAGCTCTCCATGGTGATATACAGCAGTCACAACGTGAGGTTACATTGAAAGCTTTTAGGGCCGGGAAATTCTTGACATTAGTGGCCACCAATGTGGCAGCCAGGGGTCTAGACATTAATGATGTTCAGTTGATTATCCAGTGTGAGCCCCCCCGGGATGTAGAAGCATATATTCATCGATCAGGGCGGACAGGAAGAGCTGGAAACACTGGAGTTGCTGTTATGCTTTATGATCCCAGAAGGTCCAATGTAGctaaaatagaaagagaagCAGGTGTAAAATTTGAACATGTATCTGCTCCTCAGCCTGATGAAATCGCCAAAGCTATGGGTGGGGATGCTGCTGAAATGATTACTGAGGTGTCTGATAGTGTAATTCCTGCATTCAAATCTGCTGCTGAGGAACTTCTGAAAAACTCTGGTTTATCAGCTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGATGTAAAGAAAAGATCACTACTGACTTCAATGGAGAATTATGTTACATTGCTTCTTGAGGGAGGAAAACCTATGTTCACCCCATCCTTTGCATTTGGAACCCTGAGGAGATTTGTACCTGAGGATAAAGTTGACGCAGTACAAGGTCTTGCTCTAACCGCAGATGGACAGGGTGCTGTTTTTGATGTACCAGCCAAGGACTTGGATGTATTTCTCAACAGTCAAAAGAATGCTGTTAATGTAAGCTTAAAGGTTGCTAAAGAGTTGCCAAGTTTACAACAAAGAGAGGACAATAGACCAAGCAGATACAGTAGCGGCCGTGGCTTTTCAGGTGGAAGAAACGGAGGAGGGTATAGGTTTGGAAGAGGTGGAGGTGGTGGaagaggtggtggtggtggaagaGGTTATGGAAATAGATGGTAA 2016 0.3943 MPSLPITNDAVSMESPKQKSIKKKKEKLQNDIVMEEESVKKSSKKRKKGSDDDEEVKSGTSSDEGSRMKVKKEKKKKKSKVEEVEEVVVKKDDPNAVSNFRISEPLKMKLKENGIEALFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSVRKTGYGRVPSVLVLLPTRELANQVYSDFEVYGSSLGLSACAVYGGAPYGPQENKLRRGVDIVIGTPGRIKDHIEKGNIDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVKQISTKFLKADKKTTDLVGNEKMKASTNVRHIILPCNHTAMAQLIPDIIRCYSSGGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREVTLKAFRAGKFLTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNVAKIEREAGVKFEHVSAPQPDEIAKAMGGDAAEMITEVSDSVIPAFKSAAEELLKNSGLSAVELLAKALAKAVGYTDVKKRSLLTSMENYVTLLLEGGKPMFTPSFAFGTLRRFVPEDKVDAVQGLALTADGQGAVFDVPAKDLDVFLNSQKNAVNVSLKVAKELPSLQQREDNRPSRYSSGRGFSGGRNGGGYRFGRGGGGGRGGGGGRGYGNRW 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03266 671 MobiDBLite consensus disorder prediction 623 671 - -
Tsu06g03266 671 CDD DEADc 106 303 - -
Tsu06g03266 671 Pfam Helicase conserved C-terminal domain 342 440 IPR001650 -
Tsu06g03266 671 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 252 260 IPR000629 -
Tsu06g03266 671 SUPERFAMILY RNA-binding domain, RBD 534 616 IPR035979 GO:0003676
Tsu06g03266 671 Gene3D - 9 308 IPR027417 -
Tsu06g03266 671 Gene3D - 319 545 IPR027417 -
Tsu06g03266 671 Coils Coil 67 87 - -
Tsu06g03266 671 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 337 479 IPR001650 -
Tsu06g03266 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 452 IPR027417 -
Tsu06g03266 671 Coils Coil 18 45 - -
Tsu06g03266 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 275 IPR027417 -
Tsu06g03266 671 MobiDBLite consensus disorder prediction 1 84 - -
Tsu06g03266 671 SMART helicmild6 363 440 IPR001650 -
Tsu06g03266 671 MobiDBLite consensus disorder prediction 1 15 - -
Tsu06g03266 671 SMART ultradead3 114 326 IPR014001 -
Tsu06g03266 671 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 35 661 - -
Tsu06g03266 671 CDD SF2_C_DEAD 323 449 - -
Tsu06g03266 671 CDD GUCT_RH7_like 536 621 - -
Tsu06g03266 671 MobiDBLite consensus disorder prediction 16 70 - -
Tsu06g03266 671 Pfam DEAD/DEAH box helicase 119 296 IPR011545 GO:0003676|GO:0005524
Tsu06g03266 671 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 35 661 - -
Tsu06g03266 671 Pfam GUCT (NUC152) domain 529 624 IPR012562 GO:0003723|GO:0004386|GO:0005524
Tsu06g03266 671 Gene3D - 546 619 - -
Tsu06g03266 671 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 308 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03266 Tsu-Chr6 43336544 43341636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03266 61 446 Eukaryotic Initiation Factors Gene Family AT3G13920 28.645 8.43e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03266 K16911 - jre:108998595 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03266 06 43336544 43341636 Tsu06g03266 06 43336544 43341636 ECH