LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu06g03261	ATGGGAAAAAATAACATGGTTTTTATATCAGATTTTGCTCTATCTTTCATGTGGGTATGTTCTGGTGTTCTTCTAAAgtcatttgtaaaaaaaaatataagcttCAATCATTCCAATAATGTGGTTGAGATTGTGAAAATTGGTTTTTCCATAGCCAACATGTTCTTCTATGCTTTTCTTGCTAAAGTTTTTCGTGGTGGGACTAACAATCCTCTTGCTACTTTGGTTGATGCTATCTCTGGAGATTTCCATAACTTTGCTTTTTGCATTGGTTCCAGAATTCCTGCTCAGGTGATTGGATATATTGTCGGAGTAAAACTTCTTACCGATATCATCCCTGATATAGGACACGGGCCGCGTTTGAATGTTGACATTTATCAAGGAGCGTTGACTGAAGGATTCCTAACATTTACAATTGTAGTCATTACACTTGGGATTACTGCAACAAAAATTCGTAGAAGTTTCTTCATGAAAACATGGATTTCTAGCATCATGAAGCTAATACTTCATAAACTTGGTTCTAATTTGACTGGTGGTTGTATGAACCCTGCGTCGGTAATGGGATGGGCTATTGCTCGAGGGGATCACATATCAAAGGAGCACCTCGTTGTATACTGGCTTGCCCCTATAAAGGCAACTCTTTTGGCAGTTTggatattcaaatttttagtACGACATgtgaaaaaagataaaatgagctcaaaaagtaaattaaattga	720	0.3403	MGKNNMVFISDFALSFMWVCSGVLLKSFVKKNISFNHSNNVVEIVKIGFSIANMFFYAFLAKVFRGGTNNPLATLVDAISGDFHNFAFCIGSRIPAQVIGYIVGVKLLTDIIPDIGHGPRLNVDIYQGALTEGFLTFTIVVITLGITATKIRRSFFMKTWISSIMKLILHKLGSNLTGGCMNPASVMGWAIARGDHISKEHLVVYWLAPIKATLLAVWIFKFLVRHVKKDKMSSKSKLN	239

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu06g03261	239	Pfam	Major intrinsic protein	8	220	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tsu06g03261	239	Gene3D	Glycerol uptake facilitator protein.	6	238	IPR023271	-
	Tsu06g03261	239	PANTHER	AQUAPORIN SIP2-1-RELATED	5	237	IPR044226	GO:0015267
	Tsu06g03261	239	PRINTS	Major intrinsic protein family signature	89	108	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tsu06g03261	239	PRINTS	Major intrinsic protein family signature	203	223	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tsu06g03261	239	PRINTS	Major intrinsic protein family signature	131	149	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tsu06g03261	239	PRINTS	Major intrinsic protein family signature	163	185	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tsu06g03261	239	PANTHER	AQUAPORIN SIP2-1-RELATED	5	237	-	-
	Tsu06g03261	239	SUPERFAMILY	Aquaporin-like	7	229	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu06g03261	Tsu-Chr6	43257559	43261605	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu06g03261	1	237	Major Intrinsic Protein MIP	AT3G56950	52.321	4.64e-85	252

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu06g03261	K09875		-	gmx:100786138	315.849