Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03255 ATGAGCCTCCTCTCTTCCCTGTCATCTAAAGCCATAGGAAACACCGAATTCTACAAGACCACTGTCACAAATATAAACCCTTCTGATTCAGTCTATGGATTGTTCATGTGTCGGGGGGATATTGTACCCTCTAATCTCTGTCATGAATGTGTAGTTAATgctactcaaaaactatctttAGAGTGCTCTTTCTCCAAACGAGCTGTGATTTGGTACGACCTGTGCATGGTTCGATACTCTAACAACTCTTTCTTTTCCACCGTTAATACAGAGTCTGGGGTTTTCTTGATGAACACCGGAAACGtctcaaacacaaaaaaattcatgCGTTTATTGTTTTCGACCATGAATGAAACTGCAGATGAAGCAGCACAAGCACTTATTGGTGAAGAAAACAAGAAGTTTGCCACGCGTGAGACACCTATTTCGACATTTCAGACCCTTTACTGTCTAGCTCAGTGCACACCAGACTTGTCACCCAATGATTGCAGAACTTGTCTTAGTACTGCTATTGGGGTTCTTCCACAGTGTTGTGATGGAAAGCAGGGTGGGAGAGTTTTATTTCCTAGCTGCAATGTTAGGTATGAACTATATCCTTTTTATAGGAATACGACTACTAATGCTTCATCAACAAATGAGCTTGTGCCTGAAACAAATGATTCAAAACTAGATTCAGGATTTTCACAAGATCCATTTTATCTTTCCTATAATTGCTCAAGTAAGAACACCAGCTCTTACAATATATACTTGAAATTGCTTCTCTCCTATTTATCTTCTAACGCCACCAGCGGAGAAACATTTTATAGAGTTAAAATAGAGGAAACGTTATATGGCCTCTACATGTGTCGAGGTGACCTTCCATCTCGCCTATGTGGTCAATGCGTAAAAAATGCAACAGATCAAATTTACTCAAAGTGTCGTTCAAAACAAGAGGGTATAATTTGGTATAGTCACTGCTGGCTTCGGTATTCTTATCGGAATTTCTTCTCTAAAATGGAAACAAGTCCTATATATAGCTATGTAAATATCTCCAGCTCCATTGCAATGCAAAACATATTCACTGTTATATTATCAACTCATTTAAATCAACTTGCGACAGAAGCAGGGAACAGCATTGACAGGTATACGATGAAATCGTTAAAATTGAATGCTGTACAAACCTTGTATACTCTTGAACAATGTACACAGGATTTGTCAAGTGACGATTGCACTTCATGTCTAAACGATGTGATAAGTACAGCAATTCCATGGCCAGTTTTGGGAAGTGTTGGGGGAAGAATTCTATATCCCAGTTGTAATCTGAGGTTCGAATTGTTTCCATTTTACATGGAGGATGTCAAAGCTCTGGTACCTACGAGTCCTTCTCCGTCAAAGGGAGATGCAGAGAACCGGAAGTTACGAAGAATTATCTTCATTGTTGTCCCTACCATTATTGTTGTGTTGCTCTTTTCTATCGGCTACTATTTGCTAAAGAGAAGGCGAAGAAAGAGCCGTAAGACTATTCTTCGAGAAAATTTTGGTGAAGAAAGTATCGCTTTAGAACCACTGCAGTTCGATTGGGTGGTAGTTGCAGCAGCAACCAACAACTTTTCTAAGGACACTTACATCGGAAAAGGCGGGTTTGGAGAGGTTTACAAGggAATGCTTTTTGATGGACGAGAAGTGGCTGTAAAGAGACTTTCAAGAAGTTCTATGCAAGGTGTAGAGGAGTTCAAGAATGAAGTTTTATTGATAGCCAAGCTTCAACATAGAAATCTAGTGACATTTATTGGTTTCTGCCTTGAAGAACATGAGAAAATACTTATTTATGAATTTGTTCCCAACAAAAGTCTTGATTACTTTTTATTTGATTCTCGGCGGGAAAAGTTGTTAACTTGGGTTGAACGCTATAACATTATAGGAGGAATTGCTCGAGGAATTCTATATTTGCATGAACATTCACGGCTTAAAGTTATACATCGTGATCTGAAACCTAGTAATATTCTATTAGATGAAAATATGATCCCTAAAATATCGGATTTTGGTTTGGCTCGAATTGTCGAAATAAGTCAAGATGAAGGAAGTACAAATAGAATTGTGGGAACATAtgGTTATATGTCTCCAGAGTACGTAATGTTTGGACAATTTTCTGAAAAATCCGACGTTTATAGTTTTGGAGTCATGGTTTTAGAGATTGTTGCTGGAAAGAAGAATATAAGTTCATCTACACCTCACCATGTAGCTGATAGCCTCTTGAATTATGTTTGGAGACAATGGAAGGATGAAACTCCTTTAAGTATATTGGACCCAAATATTAAAGATTATTCAAACATTGAAGTTGTTAAGTGCATTCAAATTGGTCTATTATGTGTTCAAAATGATCCAGATGCTAGACCTTCAATGGTTACAGTTGCTTCTTATCTTAGCAGCAATTCAATTGAATTACCAACTCCACAAGAACCTGCTTTTTTGTTGCATGGTAGAATGTATTCAAGTTCTACTCAATCTGCCAATAGTTCTGCACTATTGTCTATCAATGAAATGCCTACAAGTACTTTTATTCCACGATAG 2550 0.3722 MSLLSSLSSKAIGNTEFYKTTVTNINPSDSVYGLFMCRGDIVPSNLCHECVVNATQKLSLECSFSKRAVIWYDLCMVRYSNNSFFSTVNTESGVFLMNTGNVSNTKKFMRLLFSTMNETADEAAQALIGEENKKFATRETPISTFQTLYCLAQCTPDLSPNDCRTCLSTAIGVLPQCCDGKQGGRVLFPSCNVRYELYPFYRNTTTNASSTNELVPETNDSKLDSGFSQDPFYLSYNCSSKNTSSYNIYLKLLLSYLSSNATSGETFYRVKIEETLYGLYMCRGDLPSRLCGQCVKNATDQIYSKCRSKQEGIIWYSHCWLRYSYRNFFSKMETSPIYSYVNISSSIAMQNIFTVILSTHLNQLATEAGNSIDRYTMKSLKLNAVQTLYTLEQCTQDLSSDDCTSCLNDVISTAIPWPVLGSVGGRILYPSCNLRFELFPFYMEDVKALVPTSPSPSKGDAENRKLRRIIFIVVPTIIVVLLFSIGYYLLKRRRRKSRKTILRENFGEESIALEPLQFDWVVVAAATNNFSKDTYIGKGGFGEVYKGMLFDGREVAVKRLSRSSMQGVEEFKNEVLLIAKLQHRNLVTFIGFCLEEHEKILIYEFVPNKSLDYFLFDSRREKLLTWVERYNIIGGIARGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIVEISQDEGSTNRIVGTYGYMSPEYVMFGQFSEKSDVYSFGVMVLEIVAGKKNISSSTPHHVADSLLNYVWRQWKDETPLSILDPNIKDYSNIEVVKCIQIGLLCVQNDPDARPSMVTVASYLSSNSIELPTPQEPAFLLHGRMYSSSTQSANSSALLSINEMPTSTFIPR 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03255 849 ProSiteProfiles Gnk2-homologous domain profile. 90 200 IPR002902 -
Tsu06g03255 849 ProSiteProfiles Protein kinase domain profile. 530 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03255 849 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 2 210 - -
Tsu06g03255 849 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 221 446 - -
Tsu06g03255 849 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 459 839 - -
Tsu06g03255 849 ProSiteProfiles Gnk2-homologous domain profile. 1 84 IPR002902 -
Tsu06g03255 849 Gene3D Transferase(Phosphotransferase) domain 1 606 810 - -
Tsu06g03255 849 Pfam Salt stress response/antifungal 2 81 IPR002902 -
Tsu06g03255 849 Pfam Salt stress response/antifungal 353 437 IPR002902 -
Tsu06g03255 849 Pfam Salt stress response/antifungal 240 324 IPR002902 -
Tsu06g03255 849 Pfam Salt stress response/antifungal 101 198 IPR002902 -
Tsu06g03255 849 ProSitePatterns Protein kinases ATP-binding region signature. 536 558 IPR017441 GO:0005524
Tsu06g03255 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 651 663 IPR008271 GO:0004672|GO:0006468
Tsu06g03255 849 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 210 - -
Tsu06g03255 849 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 459 839 - -
Tsu06g03255 849 ProSiteProfiles Gnk2-homologous domain profile. 228 328 IPR002902 -
Tsu06g03255 849 CDD STKc_IRAK 536 801 - -
Tsu06g03255 849 Gene3D Phosphorylase Kinase; domain 1 491 605 - -
Tsu06g03255 849 SMART serkin_6 530 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03255 849 Gene3D - 1 84 IPR038408 -
Tsu06g03255 849 Gene3D - 232 328 IPR038408 -
Tsu06g03255 849 Gene3D - 91 200 IPR038408 -
Tsu06g03255 849 Gene3D - 335 441 IPR038408 -
Tsu06g03255 849 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 221 446 - -
Tsu06g03255 849 SUPERFAMILY Protein kinase-like (PK-like) 519 838 IPR011009 -
Tsu06g03255 849 Pfam Protein kinase domain 531 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03255 849 ProSiteProfiles Gnk2-homologous domain profile. 334 441 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03255 Tsu-Chr6 43147428 43154157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03255 228 849 Receptor kinase-like Gene Family AT4G05200 43.140 3.34e-170 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu06g03255 Pkinase 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03255 - - mtr:MTR_6g055960 1192.56