Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03254 atGGCTAATTTCCATAAAATTCTCCACCTCTTCACCATACTTATCTTCATCAATACTTTCACATCTACCAATTCATGGGATGACCCTTTTTTCCTATACCAATATTGCTCAAGTAACACAACATCAGCCAATACTTCATTCCAACTTGATCTCACCACCCTCCTCACTTCCTTATCATCATATGCcacaacaaacacaaacacaaaattcTACAACACAACATTCATTGGAAACAACCCTTCTGACACAATCTATGGCATGTTTTTATGTAGAAGTGATGTTCCATCTCAACTATGTCAACAAAGTATTGTCAATGCAACACAAAAACTTTCCTTACAATGTTCTTTGTCTAAAGAAGGTGTTGTTTGGTATAATGAATGTATGGTTTGGTATTCAACATCATTTATCTTCTCAACTATTGCAAGAACATTACCTAGTTTTTACTTGTTGAACACCGACAAAGTCTCGAACACAAAAAGTTTTATGAGTTTATTGTTTTCTACAATGAACAAATCTGCTGATGAAGCTGCTTTTGGAGACAAAAAATTTGCaacaaatgaaaaaactatatcaaaatttcaaacccTTTATTGTTTAACTCAATGCACACCAAATTTATCACCACATGAATGTAGAATTTGTCTAAGTGGATTAATAAATCAACTTCCAATGTGTTGTGAAGGTAGAGTTGGAGGAAGAGTTCTAAATCCAAGTTGTAATATTAGGTATGAGTTTTACCCTTTTTATCTCAAATCTATTGGTTCATCAAATCCTTCATCACAACAATTTCTACTtccacaaacaaaaaattcatatgaTGATTCATTGTTTTTAGAACAACCTTTTTACCTTTCACAAAATTGTTCAAGTAACAAAAACTTCACTTTTAGTAACACTTTCAAACTTCACCTCACAACCCTTTTTTCTTACTTATCTTCTAATGCCACCAAAAGTCTATTTCATAAAGGTGATGTGGCAAATTCAACTTTTGGACTCTTCATGTGTCGTGGTGATGTTTCTTTTTCCATATGTGAATTATGTGTGAAAAATGCAACACAAAGAATATTCAAAGAGTGTGACAATTTTCAAGAGGGTGTAATTTGGTATAGTCAATGCATGATTAGATATTCAAATTGGAATTTCTTCTCTTTAGTGGACAAAAATCATGTGTATTATGAAATGAATGTTACTAATGATTCTAGTCCAAACAAGGAGAAAAACTTGTTCAATTTTGTTATATCAACTACTTTATCAAATGTGGCAATTGTGGCTGGTGATAGTGATGAGAGATATGGAACAAAATCATTGAAATTGAATGATTTACAAACACTTTATACACTTGGTCAATGTACACAAGATTTGACAAGTGATGATTGCAAAGGTTGTTTAGGAGATGTTATTGGAAATGGAATTCCTTGGCCTTATTTGGGAAGTGTAGGTGGAAGAGTTTTATATCCTAGCTGCAATTTGAGGTTTgaattgtttcaattttataagGAGGATAAGAATTTTACCACACCAAGAATTAGTCATTCTTCATCAGgaaaaagaagaaatgggCCAGGAACAATTGCCATGATTGTTGTACTCACAATTGCTCCAGTGATACTCTTCTTTGTTGGATGCTATTTGCTAAAGAGAAAATCAAGAAAGAGTTTTAGGTCTATTCTTAGAGAAAATTTTGGTCAAGAAAGTGCAACTTTACAGCCATTGCAATTTGATTTAGCTGTAATTGAAGCAGCAACCAACaaattttcaaatgaaaatttcatTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCACACTTTTGGATGGACGACAAAtagcggtaaaaagactctcAAGAAGCTCTACGCAAGGTGCAAAAGAGTTCAAGAATGAAGTTTTACTGATCGCTAAGCTTCAACACCGAAATCTAGTCACGTTCATTGGTTTTTGCCTCGAAGAACAAGAGAAAATACTTATTTATGAATACGTGCCAAACAAGGGCCTTgatcaatttttatttgACTTTAAACGAACAAAGTTCTTAAGTTGGTTGGAACGTTACAATATTATAAGAGGAATTGCCCACGGAATTCTCTATTTACATGAACATTCTCGACTCAAAGTTATTCATCGTGACCTCAAACCTagtaatattttattagatGAAGACATGATTCCAAAAATATCAGATTTTGGTCTTGCTAGAATTGTTGAATTAAACCAAGACAAAGGAAGTACCAATAGAATCGTCGGAACATTAGGTTATATGTCTCCAGAATATGCAATGCTCGGACAATTTTCAGAGAAATCTGACGTTTATAGTTTTGGAGTCATGGTTTTAGAAATTATTACTGGAAAGAAAAATGTAAGGTCTTATGAATCACTTGTTGGTGATAGCTTCTTGAGTTATGTTTGGAGACAATGGAGGGATAAAATACCATTAAGCATATTAGACTCAAACATTAGAGGAACTTATTCTGAATTTGAAGTCATTAAATGCATTCATATTGGTTTATTATGTGTTCAACAATTCCCTGATGCAAGACCAACAATGGTAACAATTGTTTCATATCTTAACAATGATTTCATTGAATTGCCAACTCCTCAAGAACCTGCATTTTTGTTCCATGATCAAATGGGTGCAAAAGGGATTCCACAAGATTCAAGTTCTAGTCAGTCTATAAATAGTTGCACACCTTTAACTACCAATGATCTGTCTATAACTGAATTTCTTCCTCGCTAG 2736 0.3165 MANFHKILHLFTILIFINTFTSTNSWDDPFFLYQYCSSNTTSANTSFQLDLTTLLTSLSSYATTNTNTKFYNTTFIGNNPSDTIYGMFLCRSDVPSQLCQQSIVNATQKLSLQCSLSKEGVVWYNECMVWYSTSFIFSTIARTLPSFYLLNTDKVSNTKSFMSLLFSTMNKSADEAAFGDKKFATNEKTISKFQTLYCLTQCTPNLSPHECRICLSGLINQLPMCCEGRVGGRVLNPSCNIRYEFYPFYLKSIGSSNPSSQQFLLPQTKNSYDDSLFLEQPFYLSQNCSSNKNFTFSNTFKLHLTTLFSYLSSNATKSLFHKGDVANSTFGLFMCRGDVSFSICELCVKNATQRIFKECDNFQEGVIWYSQCMIRYSNWNFFSLVDKNHVYYEMNVTNDSSPNKEKNLFNFVISTTLSNVAIVAGDSDERYGTKSLKLNDLQTLYTLGQCTQDLTSDDCKGCLGDVIGNGIPWPYLGSVGGRVLYPSCNLRFELFQFYKEDKNFTTPRISHSSSGKRRNGPGTIAMIVVLTIAPVILFFVGCYLLKRKSRKSFRSILRENFGQESATLQPLQFDLAVIEAATNKFSNENFIGKGGFGEVYKGTLLDGRQIAVKRLSRSSTQGAKEFKNEVLLIAKLQHRNLVTFIGFCLEEQEKILIYEYVPNKGLDQFLFDFKRTKFLSWLERYNIIRGIAHGILYLHEHSRLKVIHRDLKPSNILLDEDMIPKISDFGLARIVELNQDKGSTNRIVGTLGYMSPEYAMLGQFSEKSDVYSFGVMVLEIITGKKNVRSYESLVGDSFLSYVWRQWRDKIPLSILDSNIRGTYSEFEVIKCIHIGLLCVQQFPDARPTMVTIVSYLNNDFIELPTPQEPAFLFHDQMGAKGIPQDSSSSQSINSCTPLTTNDLSITEFLPR 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03254 911 SMART serkin_6 585 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03254 911 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 513 901 - -
Tsu06g03254 911 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 274 502 - -
Tsu06g03254 911 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 257 - -
Tsu06g03254 911 Gene3D Phosphorylase Kinase; domain 1 547 660 - -
Tsu06g03254 911 ProSitePatterns Serine/Threonine protein kinases active-site signature. 706 718 IPR008271 GO:0004672|GO:0006468
Tsu06g03254 911 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 17 257 - -
Tsu06g03254 911 ProSiteProfiles Gnk2-homologous domain profile. 29 136 IPR002902 -
Tsu06g03254 911 Pfam Protein kinase domain 586 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03254 911 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
Tsu06g03254 911 CDD STKc_IRAK 591 858 - -
Tsu06g03254 911 ProSiteProfiles Gnk2-homologous domain profile. 282 381 IPR002902 -
Tsu06g03254 911 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 274 502 - -
Tsu06g03254 911 Pfam Salt stress response/antifungal 36 133 IPR002902 -
Tsu06g03254 911 Pfam Salt stress response/antifungal 288 378 IPR002902 -
Tsu06g03254 911 Pfam Salt stress response/antifungal 159 245 IPR002902 -
Tsu06g03254 911 Pfam Salt stress response/antifungal 404 493 IPR002902 -
Tsu06g03254 911 ProSitePatterns Protein kinases ATP-binding region signature. 591 613 IPR017441 GO:0005524
Tsu06g03254 911 Gene3D Transferase(Phosphotransferase) domain 1 661 862 - -
Tsu06g03254 911 SUPERFAMILY Protein kinase-like (PK-like) 569 879 IPR011009 -
Tsu06g03254 911 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 513 901 - -
Tsu06g03254 911 ProSiteProfiles Gnk2-homologous domain profile. 391 497 IPR002902 -
Tsu06g03254 911 Gene3D - 145 248 IPR038408 -
Tsu06g03254 911 Gene3D - 388 497 IPR038408 -
Tsu06g03254 911 Gene3D - 28 135 IPR038408 -
Tsu06g03254 911 Gene3D - 282 381 IPR038408 -
Tsu06g03254 911 ProSiteProfiles Protein kinase domain profile. 585 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03254 Tsu-Chr6 43141417 43145654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03254 281 911 Receptor kinase-like Gene Family AT4G05200 44.343 1.70e-177 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu06g03254 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03254 - - gmx:100806048 1233.01