Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03251 atggCTTActctaaaattttctttttctctatcCTTGTTAGATTCCTCACTTTTGCAACAACCATGGCACAAGACTcatcattttttctaaataaagTTTGTTCCTCTAACATTACCACAACCAATAGCAACTTCCATGCCAATCTCATGATACTCCTCAATTCATTGTCATCAAAAGCCATAGACAACACTGAATTCTACGACCCTATTATTGGTATAAATCCTTCAGATTCTGTCTATGGATTGTTCATGTGTAGAGGTGATGTGGACTCTCAACTTTGTCATGAATGCATAGGCAATGCAACTCAACATCTATCCTCAGAGTGTTCTTTGTCCATACAAGCTTCGATTTGGTACAACGACCACTGCTTGCTTCGCTATTCAAGTCAATATTTTTTCCCTAACATCGCCGAAACAAGTCCTATGTACCGCGATATAAACATCACCAATCATTTCATCTCGGACCAAAACTTGTTCACTAGTACATTATCGAATCAGTTATCTGAACTTGCGAATGATACGGGGAATAGTGATGAAAAATATAAGACAAATTCATTACAATTGAATGATGTACAAACCTTATATACTCTTGAACAATGTACACCAGATTTGAGTAGTCAGGAATGCATTTCTTGTCTAAATGATATGATAAGTACAAAAATTCCATGGTCATTTTTGGGAAGTGTTGGTGGAAGGATTATATATCCTAATTGCAATCTCAGATTTGAATTGTTCCAATTTTACATGGAGAACGATCGGTCGCCCGGGAATCTTTCAGGAGAAACAGGTGAACTCTTTGCTCaagtaggtttttttttgttaaAGAGGAAAATTATCTTAATTGTCGTCCCTACAATTATTTTGGTGATGCTCTTTTCTATCGGCTACTATTTGCTAAAGGGAAGGGGAAGAAAGAATCGTAGGGCTATTCTTCGAGATAATTTTGGTAAAGAAAGTGACACTTTAGAACCACTTCAATTCGATTGGGCAGTAATTGAAGCAGCAACCAACAACTTTTCTAATGACAATTATATTGGCAAAGGCGGATTTGGAGAAGTTTACAAGggtATCCTTTTGGATGGACAAGAAGTTGCTATAAAGAGGCTTTCAAGAGGTTCTAAACAAGGTGTAGAGGAGTTCAAGAATGAAGTTTTATTGATAGCCAAGCTTCAACATAGAAATCTAGTGACATTTATTGGTTTTTGCCTTGAAGGACATGAGAATATACTTATTTATGAATTTGTGCCCAATAAAAGTCTTGATTACTTTTTATTTGATTCTCAGCGTCAAAAGTTGTTAACTTGGGTTGAGCGCTTTAACATCATAGGAGGAATTACTCGAGGAATTCTTTATTTGCATGAACATTCTCGACTCAAAGTTATACATCGTGATCTCAAACCTAGTAATATTTTGTTAGATGAAAATATGATTCCTAAAATTTCCGATTTTGGTTTGGCTCGAATTATGGAAATAAGCCAAGACGAAGGAAGTACAAATAGAATTGTTGGAACATAtgGTTATATGGCTCCGGAATATGCTATGCTTGGACAATTTTCTGAAAAGTCGGACGTTTATAGTTTTGGAGTCATGATGTTGGAGATTGTTGCTGGAAAGAAGAATATAACTTCACATGCACAACACCATGTTGCCGATAACCTCTTGAATTATGTATGGAGACAATGGAATGATCAAACACCTTTAAGTATATTGGACccaaaaattaaagaagattaTTCAGAAACTGAATTCATAAAATGCATTCAGATTGGTCTATTATGTGTTCAACGTGACCCAGATGCTAGACCTTCAATGGTAACAATTGCTTCTTATCTTAGCAGTTACTCAATTGAATTACCAACACCACAAGAACCTGCATTTTTCTTGCATGAGAGAACGTTTTCAAATGTTACTGCACAAGGATCAAGTTCTACTCAATCTGTTAATAGTTCTTCATTGTTGTCTATCAATCAAATGTCTACTACAAATACTTTTATTCCTCGCTAG 2004 0.3438 MAYSKIFFFSILVRFLTFATTMAQDSSFFLNKVCSSNITTTNSNFHANLMILLNSLSSKAIDNTEFYDPIIGINPSDSVYGLFMCRGDVDSQLCHECIGNATQHLSSECSLSIQASIWYNDHCLLRYSSQYFFPNIAETSPMYRDINITNHFISDQNLFTSTLSNQLSELANDTGNSDEKYKTNSLQLNDVQTLYTLEQCTPDLSSQECISCLNDMISTKIPWSFLGSVGGRIIYPNCNLRFELFQFYMENDRSPGNLSGETGELFAQVGFFLLKRKIILIVVPTIILVMLFSIGYYLLKGRGRKNRRAILRDNFGKESDTLEPLQFDWAVIEAATNNFSNDNYIGKGGFGEVYKGILLDGQEVAIKRLSRGSKQGVEEFKNEVLLIAKLQHRNLVTFIGFCLEGHENILIYEFVPNKSLDYFLFDSQRQKLLTWVERFNIIGGITRGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIMEISQDEGSTNRIVGTYGYMAPEYAMLGQFSEKSDVYSFGVMMLEIVAGKKNITSHAQHHVADNLLNYVWRQWNDQTPLSILDPKIKEDYSETEFIKCIQIGLLCVQRDPDARPSMVTIASYLSSYSIELPTPQEPAFFLHERTFSNVTAQGSSSTQSVNSSSLLSINQMSTTNTFIPR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03251 667 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 15 256 - -
Tsu06g03251 667 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 273 656 - -
Tsu06g03251 667 Gene3D Transferase(Phosphotransferase) domain 1 415 620 - -
Tsu06g03251 667 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Tsu06g03251 667 Pfam Salt stress response/antifungal 154 243 IPR002902 -
Tsu06g03251 667 ProSiteProfiles Gnk2-homologous domain profile. 139 247 IPR002902 -
Tsu06g03251 667 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 256 - -
Tsu06g03251 667 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 273 656 - -
Tsu06g03251 667 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Tsu06g03251 667 SMART serkin_6 339 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03251 667 ProSiteProfiles Protein kinase domain profile. 339 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03251 667 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Tsu06g03251 667 Pfam Protein kinase domain 341 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03251 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Tsu06g03251 667 Gene3D Phosphorylase Kinase; domain 1 305 414 - -
Tsu06g03251 667 Gene3D - 141 247 IPR038408 -
Tsu06g03251 667 Gene3D - 26 132 IPR038408 -
Tsu06g03251 667 CDD STKc_IRAK 345 611 - -
Tsu06g03251 667 SUPERFAMILY Protein kinase-like (PK-like) 322 650 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03251 Tsu-Chr6 43066394 43070266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03251 4 667 Receptor kinase-like Gene Family AT4G05200 42.420 9.93e-178 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu06g03251 Pkinase 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03251 - - mtr:MTR_6g055960 850.121