Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03228 ATGCTTCCTCGTAAACTCTCTCAATCTCAGTCGTCCATTTCATCATcctcaccaccaccacctcaccaccaccaccacatccTAATTCCTCTCCTCGCCGGAACCACCGTCGTACTAACTCTCCTCCTCATCTTCACCTTCCTCCGCCGCCGCACCCGAAAAAAACGCACATCCCCATTCTCCGCCACCGACAACGACCCACCCCACCGTTTCTCCTACTCCCTCCTCCGCCGTGCCACAAACTCATTCTCCAACCCACTCGGCCATGGTGGCTTCGGCACCGTCTACTCTGGCACACTCTCTTCAAAACCAATCGCTGTTAAGCTCATGGATACTTCCTCTCACCAAGGTGAACGCGAATTTCACAACGAACTCTTCTTCGCTTCAAAGCTTTGTTCTCTATATATAATTCCACCGTTAGGGTTTTCGTCTGATCCAAAACGACATCGTTTTCTACTTGTTTACCCTTTAATGCAAAACGGTAATCTTCAAGATGCACTTTTGAAGCGTAAGTGTTCTGAACTTTTTAATTGGgaaaaaagatttgaaattgtGTTGGATATTGCTAAAGGACTTTGTTATCTTCACTCTTTTGATCCTCCTGTTATACATGGTGATATAAAACCTAGTAATATTCTTTTAGATTGTGATTTTAATGCTAAAATTGGCGATTTTGGACTTGCTCGGTTGAAATCGGAGCCGGTTAGGGTTGATGTTGAGCTTTTGGGTattgatagtgatgatgaaatgaagaaaaggaatgaaaatgatgatttggAGTGTGGTGGTGTTCAGGTTGTGATTGATGATTGTGGATCAATGGAGAGTGTGCATAATAGTTTTTTTGAAGAGGGTGGTAATTTGGGTGTGGAGCAATCTTCGGTGGCTTCGCCGGAAACTGTTGAGATGAGAATGACTATCACAATGGCATTGGCGGCGTCGCCGTGTTTTGATAAGGGGAGTGTCAAGAGTGAGAAGGATGTTGTTGGTGTTGAGGATGGTAAGAGAATTGGGAAGGGGTTGACAAGTAATTTGGTTAGGGATTGGTGGTGGAAACAGGACAATGAGGTCGCGGGTTTGACGCCGGTTGGTGAAGGTAAGAAGGTGAAGGATTATGTGATGGATTGGATTGGTAGAGAAGTGAAAAGTGAGAAGGGCGAATTGGCGGGCGTGAAGATGGGGAAGCGGGAaatgaagaaggagaagaagaacaGGAAGCAGAAATTGGAATGGTGGGAATCAATGGACGAGGAAAATGTTGGCGGGGTGGTGAAGAAGGATAAGAGAAAGTCGGTGAGGGAATGGTGGAAGGAGGAGTATTGTGAAGAGGTTGCaaaggagaaaaagaagaagaggaagcaTAAGAAGATGAAAAAGGGTGTAGAAAATGATGATGACATTAGCAATGACGATACTTGGTGGATGAGTGATGATGCATTATATGTGGataaaaagaaggaaaagagaAGAAGCAGGAATAACCGCGGTAGTGGTGATTGGTGGTTAGACGGATTCAGTGGTGACCTATGGCGAGCACGCAGGAATAGCTTCGATTCAACTAGTGGAGACATTCCAAAAAGTGGTGGTGTGAGTAGTACTCCAAGTATGAGAGGAACCATTTGTTATGTTGCTCCCGAGTGTGGCTATGGCGATGATGTCTCCGAAAAGTGTGATGTTTATAGCTTCGGGATCTTGTTGCTTGTTATCATTTCTGGGAGGCGTCCACTTCAAGTGACCGGTTCACCGTTGTCAGAGTTTCAACGAGCTAATCTTTTGTCATGGGCACGCCACTGTGCCAGAAACGGGAAGCTCATTGAGCTGGTTGACGAGTCTATTCAGTCATTGAATAAGGACCAAGCTCTAATCTGCATCAAAGTGGCTTTACTTTGTTTGCTTAAGTCACCTGTTCGACGTCCTTCAATGAAGGAGGTTGTCGGGATGCTTAGTGGCGAGTTAGAAACACCCCAATTACCTGTTGAGTACTCACCTTCGACTCCTTCTCGCTTTCCTTTCAAATCCAGGAAGAAAGGTCAAGGCCGGCAAGTTGGTTAG 2052 0.422 MLPRKLSQSQSSISSSSPPPPHHHHHILIPLLAGTTVVLTLLLIFTFLRRRTRKKRTSPFSATDNDPPHRFSYSLLRRATNSFSNPLGHGGFGTVYSGTLSSKPIAVKLMDTSSHQGEREFHNELFFASKLCSLYIIPPLGFSSDPKRHRFLLVYPLMQNGNLQDALLKRKCSELFNWEKRFEIVLDIAKGLCYLHSFDPPVIHGDIKPSNILLDCDFNAKIGDFGLARLKSEPVRVDVELLGIDSDDEMKKRNENDDLECGGVQVVIDDCGSMESVHNSFFEEGGNLGVEQSSVASPETVEMRMTITMALAASPCFDKGSVKSEKDVVGVEDGKRIGKGLTSNLVRDWWWKQDNEVAGLTPVGEGKKVKDYVMDWIGREVKSEKGELAGVKMGKREMKKEKKNRKQKLEWWESMDEENVGGVVKKDKRKSVREWWKEEYCEEVAKEKKKKRKHKKMKKGVENDDDISNDDTWWMSDDALYVDKKKEKRRSRNNRGSGDWWLDGFSGDLWRARRNSFDSTSGDIPKSGGVSSTPSMRGTICYVAPECGYGDDVSEKCDVYSFGILLLVIISGRRPLQVTGSPLSEFQRANLLSWARHCARNGKLIELVDESIQSLNKDQALICIKVALLCLLKSPVRRPSMKEVVGMLSGELETPQLPVEYSPSTPSRFPFKSRKKGQGRQVG 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03228 683 ProSiteProfiles Protein kinase domain profile. 81 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03228 683 Pfam Protein tyrosine and serine/threonine kinase 83 231 IPR001245 GO:0004672|GO:0006468
Tsu06g03228 683 Pfam Protein tyrosine and serine/threonine kinase 533 646 IPR001245 GO:0004672|GO:0006468
Tsu06g03228 683 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 12 677 - -
Tsu06g03228 683 SUPERFAMILY Protein kinase-like (PK-like) 60 666 IPR011009 -
Tsu06g03228 683 SMART serkin_6 81 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03228 683 MobiDBLite consensus disorder prediction 656 683 - -
Tsu06g03228 683 Gene3D Transferase(Phosphotransferase) domain 1 513 657 - -
Tsu06g03228 683 Gene3D Transferase(Phosphotransferase) domain 1 158 254 - -
Tsu06g03228 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Tsu06g03228 683 ProSitePatterns Protein kinases ATP-binding region signature. 87 108 IPR017441 GO:0005524
Tsu06g03228 683 MobiDBLite consensus disorder prediction 1 21 - -
Tsu06g03228 683 Gene3D Phosphorylase Kinase; domain 1 68 156 - -
Tsu06g03228 683 Coils Coil 437 457 - -
Tsu06g03228 683 MobiDBLite consensus disorder prediction 1 19 - -
Tsu06g03228 683 PANTHER OS07G0586332 PROTEIN 12 677 IPR044576 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03228 Tsu-Chr6 42810001 42812395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03228 526 648 Receptor kinase-like Gene Family AT3G58690 31.008 5.59e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Tsu06g03228 PK_Tyr_Ser-Thr 1.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03228 - - lja:Lj2g3v0473820.1 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03228 06 42810001 42812395 Tsu01g04497 01 52595088 52597375 PCT