Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03225 ATGGAAGATATCAAGAAATGGATGCATAAAGAGACAGAAAAGCAAAGAAGGCAAGAGATGGCCAACCTCTGCACCTCCCTTAGATCTCTTCTTCCTTTAGAGTATATTAAGGGAAAGCGCTCAATTTCGGATCATGTGAATGAAGCTATCAATTATATCAACCACCTACAAAACAAGGTGAAACAATTACAAGATAAGAAGGAAGATTTAATGAAGGTGtctaatttgaataaaaatatccCTCAAAATGGCTCTAGTACTAGTACCAATTTTCAACCCTTTGTTATTGTTCAACCTTTCCCTGGAGGACTTGAGATTGTGTGCAGTTACACCCCCAAGATATGTTTGTTTCCTTTGTCAAGAATGTTAGATATGCTGCTTAAAGAAGGGCTTAATGTGATAAGTAGTAATTGCAACAAAATAGATGGAAGATTCATATACACTATACGAGCTGAGGATCCAATAATGTCAGGCATTGATTACTCTCAACTGCAAAGAAAGCTTACAGATGCAATATTATCATCCTCAAGTTTGCAAGATAGTTCGTCTGAACCTGGAATTCACAATATGTTGAGATAA 579 0.3558 MEDIKKWMHKETEKQRRQEMANLCTSLRSLLPLEYIKGKRSISDHVNEAINYINHLQNKVKQLQDKKEDLMKVSNLNKNIPQNGSSTSTNFQPFVIVQPFPGGLEIVCSYTPKICLFPLSRMLDMLLKEGLNVISSNCNKIDGRFIYTIRAEDPIMSGIDYSQLQRKLTDAILSSSSLQDSSSEPGIHNMLR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03225 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Tsu06g03225 192 CDD bHLH_AtORG2_like 5 79 - -
Tsu06g03225 192 Gene3D - 1 85 IPR036638 GO:0046983
Tsu06g03225 192 PANTHER TRANSCRIPTION FACTOR 1 180 - -
Tsu06g03225 192 Coils Coil 46 73 - -
Tsu06g03225 192 SMART finulus 10 62 IPR011598 GO:0046983
Tsu06g03225 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 73 IPR036638 GO:0046983
Tsu06g03225 192 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Tsu06g03225 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 180 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03225 Tsu-Chr6 42782045 42784585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03225 3 168 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.045 1.07e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu06g03225 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03225 - - ccaj:109791323 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03225 06 42782045 42784585 Tsu01g04496 01 52590051 52591245 PCT