Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03198 atggGAAGAGGGAGAGTAGTTTTGGAGAGAATAGAGAATAAGATCAATAGGCAAGTAACATTCTCAAAGAGAAGGAGTGGGTTGTTGAAGAAAGCTTTTGAGCTTTGTGTGCTATGTGATGCAGAAGTAGCACTTATCATCTTTTCAAGCCGTGGCAAGCTTTTTCAATACAGCAGCACAGATATTAACAAAATCATTGAAAGGTATCGCCATTGTCGATACAACAAGTTAGAAGCTGGCAATTCATTAGGACACAATGACTCACAGAACTTATACCAGGAGTACTTGAAACTAAAGGCAAGATATGAATCTCTTGACGGAAAACAGAgGCATTTTCATGGGGAAGAACTTGAGGAACTTAGCATGAAAGAATTGGAGAGCCTCGAAGAACAACTAGAATTAACACTCACACAAGCTCGACAACTACAAATGAAGAAGCTCTTTGCACGAGCAGAGGAACTACGTGAAAAAGTTCATGACTTGGAGGAGCTTAACAAAACATTGGAGCCCAAGGGAATAGATGAATTCTCAAACATCCTTGCTGACAAAACAAGCCATATTCAATTGGAAGCTATAGAAAGCCAATCATTTTGA 594 0.3889 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTDINKIIERYRHCRYNKLEAGNSLGHNDSQNLYQEYLKLKARYESLDGKQRHFHGEELEELSMKELESLEEQLELTLTQARQLQMKKLFARAEELREKVHDLEELNKTLEPKGIDEFSNILADKTSHIQLEAIESQSF 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03198 197 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Tsu06g03198 197 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Tsu06g03198 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu06g03198 197 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu06g03198 197 PANTHER MADS BOX PROTEIN 1 180 - -
Tsu06g03198 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu06g03198 197 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Tsu06g03198 197 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 180 - -
Tsu06g03198 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu06g03198 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu06g03198 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu06g03198 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu06g03198 197 Coils Coil 122 171 - -
Tsu06g03198 197 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03198 Tsu-Chr6 42434051 42438781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03198 1 187 MADS-box Gene Family AT2G45650 49.741 4.22e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu06g03198 K-box 6.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03198 K09264 - gmx:100793681 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03198 06 42434051 42438781 Tsu06g03198 06 42434051 42438781 ECH