Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03182 ATGCAAgagtcagaagaagaaaatcaTGACCTTGCTAAAAAGTCAAAGCCACTAGAGGAAAATGGATTTTCCATGGATTTTGATATTGACTTTGAAAATTTATGGCCTTTGGATCATATTTCTAACACTATGTATCCTTTTCTTTTATCAACAACCTCTGAACAACACTTTTCTCCTATTTGGACTTTTTctgatgttgaagatgataGCATTGCAGCTTCagGTAACAACACAAAGACAGAAACCGATAACCGAGTCGAAAATGACGACAAGAAAAAACATGTGACGCCCCACCATGTAGAAGTAGTTCCGAATTTACAAACTCTACATGGTTATTGTCTTATCAAGGAAAGAATGACACAAGCTCTTAGGCAATTCAAAGAGTTAACTGAACAGAATGTTCTAGCTCAAGTTTGGGCGCCGGTAAGGAACGGAAATCGGTATAAACTCACAACTTCAGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTTCATCAGTATAGAACAGTTTCTTTGATGTATATGTTTTCTGTTGATGGAGAAAACGATGAAATTTTAGGGCTACCTGGAAGAGTTTTTCAGCAGAAGTTACCGGAATGGACTCCTAATGTTCAATATTATTCTAGTAAAGAATATTCAAGGCTAAATCATGCTTTACATTACAATGTTCGCGGAACTTTGGCGTTGCCGGTGTTTGAACCTCCAGGGCAATCGTGTGTTGCTGTGTTGGAATTGATTATGACTTCTCAGAAGATTAACTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCACTTGAGGCAGTAAATTTGAGGAGTTCCGAGATTTTGGAGTATCCATACAGTCAGATTTGTAACAAAGACCGACAGAATGCATTATCCGAGATTTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTTTGGCACAAACTTGGGTTCCCTGTAGGCATAGAAGTGTTTTGGCTCATGGTGGTGGTCTTAAGAAAAGTTGCTCGAGTTTTGATGGTTATTGTATGGGACAAGTTTGCATGTCTATAACCGAGGTAGCGTTTTATGTAATAGACTCTCATACATGGGGTTTCCATGATGCATGTGTTGAGCATCACTTACAACAAGGTCAAGGAGTTTCCGGTAGAGCTTTTTTGACTCAGAACATGTGTTTCTGCGAAAACATTACTCAATTCTGCAAAACCGATTACCCTTTAGTACATTATGCTCTCATGTTTGATTTAACAAGCTGTTTTTCAATCTGTTTACAAAGTTCTCATACCGGAAATGATGAATATGTACTAGAGTTTTTTCTGCCTCCTAGTATAATTGAATTTTGTGAACATAAGGCTTTGTTGGGATCGATCTTGGCaataatgaaacaaaatttcCAAAGTCTTAAGGTTGCTTCTGGTTTTGAACTTGAGGAGGATGGATCAATTGAAATTGTTGAAATATTAAATGGAAGAGTTCATTCGAGGGTTGAGTCTGTTCCGATTATTCAATCTGAAAAATTATCTACTAGACATGATGATGCCTCGCCGAATATGGAGGAGGGAGTGCTTCCATTAGATCCATTACAACAGAAAGTAATCACAAGTTTTGATGACATAAATGATAGACGGATTCTTGATGTTAATACAGGTGGAAACATTGATCGGATCTCTTCCTTGGAgacaaaaaccaaaaagaaaacctcCCAAAGAAAACGCGGAAAAGCTGAGAAATCAATTAGTCTTGATGTGTTGCAAAATTATTTCAGTGGGAGTCTAAAGGATGCTGCAAAGAGCCTCGGAGTTTGTCCTACTACGATGAAGCGAATCTGCAGGCAGCATGGAATATCCCGTTGGCCATCACGAAAGATAAAAAAGGTTAACCGTTCCTTGTCGAAGCTCAAGTGCGTTATTGAATCTGTCCATGGTGTTGAAGGAGCATTTGGTTTGAATTCTCCAACTACAAGTCCACTCCATATTGCTTCCAGTTCCTTTAATCAACCTTCTACTTCAAACAAGTTTGAACACCAAACCGCATTAAACATAATTCCATCAGAACCTAAGATGAACGAAAATTATTTGAATGCTTCAAAATCACAACCTCAAGAACCATTTATAGGAATGCTAATTGAAGGTGCAGATAGTTGTTCTAAAGACTTGAAAAATATGTGTCCTTTAGCAGATACTGTTTTGGAGGATCAAATCCTTGAAGCTTCGAGGACTAATCCTCCATGTTTCGATTTTGCACCTTTAGCTGAGAAAGAGATGAAGATTGTGACTATTAAGGCAACATATAGAGATGATATCATAAGATTTAGGGTGTCTTTGAACTGTGGCATTGTGGAATTGAGAGAAGAAATTTCCAAAAGATTGAAACTAGAGGTAGGGACATTTGATATCAAGTATATGGATGATGATCAAGAATGGATTTTGGTGGCATGTGATGCTGACCTGCAGGAGTGCATGGATATTTTAACATCATCAGGCAGCAATATTATCAGGCTTGTTGTGCATGATATTGTGTCCATTCTTGGAAGCTCGGTCGAGATCTCAGAGTAG 2553 0.3717 MQESEEENHDLAKKSKPLEENGFSMDFDIDFENLWPLDHISNTMYPFLLSTTSEQHFSPIWTFSDVEDDSIAASGNNTKTETDNRVENDDKKKHVTPHHVEVVPNLQTLHGYCLIKERMTQALRQFKELTEQNVLAQVWAPVRNGNRYKLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDEILGLPGRVFQQKLPEWTPNVQYYSSKEYSRLNHALHYNVRGTLALPVFEPPGQSCVAVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILEYPYSQICNKDRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGYCMGQVCMSITEVAFYVIDSHTWGFHDACVEHHLQQGQGVSGRAFLTQNMCFCENITQFCKTDYPLVHYALMFDLTSCFSICLQSSHTGNDEYVLEFFLPPSIIEFCEHKALLGSILAIMKQNFQSLKVASGFELEEDGSIEIVEILNGRVHSRVESVPIIQSEKLSTRHDDASPNMEEGVLPLDPLQQKVITSFDDINDRRILDVNTGGNIDRISSLETKTKKKTSQRKRGKAEKSISLDVLQNYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGVEGAFGLNSPTTSPLHIASSSFNQPSTSNKFEHQTALNIIPSEPKMNENYLNASKSQPQEPFIGMLIEGADSCSKDLKNMCPLADTVLEDQILEASRTNPPCFDFAPLAEKEMKIVTIKATYRDDIIRFRVSLNCGIVELREEISKRLKLEVGTFDIKYMDDDQEWILVACDADLQECMDILTSSGSNIIRLVVHDIVSILGSSVEISE 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03182 850 SUPERFAMILY CAD & PB1 domains 754 841 - -
Tsu06g03182 850 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 696 - -
Tsu06g03182 850 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 697 849 - -
Tsu06g03182 850 Coils Coil 1 21 - -
Tsu06g03182 850 ProSiteProfiles RWP-RK domain profile. 562 645 IPR003035 -
Tsu06g03182 850 Gene3D - 753 837 - -
Tsu06g03182 850 CDD PB1_NLP 757 837 IPR034891 -
Tsu06g03182 850 MobiDBLite consensus disorder prediction 72 92 - -
Tsu06g03182 850 PANTHER PROTEIN NLP8 3 696 IPR045012 GO:0003700
Tsu06g03182 850 PANTHER PROTEIN NLP8 697 849 IPR045012 GO:0003700
Tsu06g03182 850 SMART PB1_new 756 838 IPR000270 GO:0005515
Tsu06g03182 850 Pfam RWP-RK domain 578 625 IPR003035 -
Tsu06g03182 850 Pfam PB1 domain 757 837 IPR000270 GO:0005515
Tsu06g03182 850 ProSiteProfiles PB1 domain profile. 756 838 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03182 Tsu-Chr6 42050754 42055659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03182 170 850 NLP Transcription Factor Family AT1G64530 54.558 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tsu06g03182 PB1 1.9e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03182 - - mtr:MTR_0022s0430 1449.11